YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125538299
Organism:	Oryza sativa Indica Group
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125538299.

Description	E-value	Query Range	Subject Range
gi\|4938477, gi\|7... - pir\|\|T08977 hypothetical protein F6G3.40 - Arabidopsis thaliana, gi\|7269901\|emb\|CAB80994.1\| putativ...	145.0	[0..1]	[89..1]
gi\|30841448 - gi\|30841448\|gb\|AAP34362.1\| fiber protein Fb15 [Gossypium barbadense]	142.0	[0..1]	[88..1]
gi\|92877483 - gi\|92877483\|gb\|ABE84580.1\| fiber protein Fb15 [Medicago truncatula]	140.0	[0..1]	[88..1]
gi\|42565482 - gi\|42565482\|gb\|AAS21008.1\| fiber protein [Hyacinthus orientalis]	137.0	[0..8]	[95..7]
gi\|116056008 - gi\|116056008\|emb\|CAL58541.1\| unnamed protein product [Ostreococcus tauri]	124.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRALISEI RGMKVREVPG YLKPRLSWEN VKKSSDQAVD RYIDKYIETS SPEPLFHVIY  60
   61 GLMAFSYLIN LPKERRHLAH LEELERQGAA GAAHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits