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View Structure Prediction Details

Protein: gi|125539950
Organism: Oryza sativa Indica Group
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125539950.

Description E-value Query
Range
Subject
Range
gi|115446789, gi... - gi|115446789|ref|NP_001047174.1| Os02g0566800 [Oryza sativa (japonica cultivar-group)], gi|113536705...
344.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKGKGGAV DRRSSARWRM LLLCAFCFGL GMLFTDRFWT APDTSNHIMS QRRRQDRELQ  60
   61 LISEDCNTKR KHGEDKDIMG EVTKTHEAIQ LLDKSISTLQ MELAAKRSTL ELLRAGGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTSETSQPR KKAFVVIGVN TAFSSRKRRD SVRETWMPQG AKLQQLEDQK GIVIRFTIGH  60
   61 SATSNSILDK AIDSEDAQHR DFLRLDHVEG YHELSAKTKI FFSTAVGIWD ADFYVKVDDD 120
  121 VHVNLGMLAT TLARHKSKPR TYIGCMKSGP VLADKNVKYH EPEYWKFGEE GNKYFRHATG 180
  181 QIYAISKDLA TYISINQPIL HKFANEDVSL GSWFIGLEVN HIDERNMCCG TPPDCEWKGQ 240
  241 AGNVCVASFD WSCSGICKSV ERIKEVHARC GEGDSAVWSA LI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle