YRC Public Data Repository - Protein Structure Prediction

Protein:	PRRP_RAT
Organism:	Rattus norvegicus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRRP_RAT.

Description	E-value	Query Range	Subject Range
gi\|82881160, gi\|... - gi\|94365377\|ref\|XP_985109.1\| PREDICTED: similar to prolactin releasing hormone [Mus musculus], gi\|82...	109.0	[0..1]	[81..1]
PRLH - prolactin releasing hormone	105.0	[0..19]	[83..20]
gi\|73994200 - gi\|73994200\|ref\|XP_848794.1\| PREDICTED: similar to prolactin releasing hormone [Canis familiaris]	101.0	[0..19]	[83..20]
gi\|109101599 - gi\|109101599\|ref\|XP_001084860.1\| PREDICTED: similar to prolactin releasing hormone [Macaca mulatta]	100.0	[0..22]	[83..21]
gi\|112821186 - gi\|112821186\|dbj\|BAF03223.1\| prolactin-releasing peptide [Xenopus laevis]	99.0	[0..3]	[65..19]
PRRP_SHEEP - Prolactin-releasing peptide OS=Ovis aries GN=PRLH PE=2 SV=1	96.0	[0..22]	[81..23]
PRRP_BOVIN - Prolactin-releasing peptide OS=Bos taurus GN=PRLH PE=1 SV=1	91.0	[0..22]	[81..23]
gi\|87242615 - gi\|87242615\|gb\|ABD33839.1\| prolactin-releasing peptide C-RFamide precursor [Cyprinus carpio]	85.0	[0..7]	[60..24]
gi\|4587205 - gi\|4587205\|dbj\|BAA76662.1\| C-RF amide precursor [Carassius auratus]	79.0	[0..7]	[60..24]
gi\|66269758, gi\|... - gi\|66269758\|gb\|AAY43233.1\| prolactin-releasing peptide C-RFamide precursor [Salmo salar], gi\|1851321...	69.0	[0..16]	[56..66]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKTWLLCL LLLSLVLPGA SSRAHQHSME TRTPDINPAW YTGRGIRPVG RFGRRRATPR  60
   61 DVTGLGQLSC LPLDGRTKFS QRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.316	a.150.1	Anti-sigma factor AsiA
View	Download	0.296	d.39.1	Dynein light chain 8 (DLC8)
View	Download	0.289	a.4.1	Homeodomain-like
View	Download	0.278	a.4.13	Sigma3 and sigma4 domains of RNA polymerase sigma factors
View	Download	0.262	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.261	a.64.1	Saposin
View	Download	0.223	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits