YRC Public Data Repository - Protein Structure Prediction

Protein:	ACBP_RAT
Organism:	Rattus norvegicus
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACBP_RAT.

Description	E-value	Query Range	Subject Range
gi\|73949054 - gi\|73949054\|ref\|XP_848899.1\| PREDICTED: similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding...	128.0	[0..1]	[87..211]
gi\|12052810 - gi\|12052810\|emb\|CAB66577.1\| hypothetical protein [Homo sapiens]	123.0	[0..2]	[84..39]
gi\|114580585 - gi\|114580585\|ref\|XP_515759.2\| PREDICTED: diazepam binding inhibitor isoform 3 [Pan troglodytes] DBI - diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)	123.0	[0..1]	[87..1]
ACBD5_XENTR - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus tropicalis GN=acbd5 PE=2 SV=1	122.0	[0..1]	[87..7]
ACBD5_XENLA - Acyl-CoA-binding domain-containing protein 5 OS=Xenopus laevis GN=acbd5 PE=2 SV=1	122.0	[0..1]	[87..7]
gi\|73586638, gi\|... - gi\|77735439\|ref\|NP_001029414.1\| peroxisomal D3,D2-enoyl-CoA isomerase [Bos taurus], gi\|73586638\|gb\|A...	121.0	[0..2]	[81..38]
gi\|73746605 - gi\|73746605\|gb\|AAZ82211.1\| diazepam-binding protein [Nomascus gabriellae]	120.0	[0..2]	[87..19]
gi\|148707856, gi... - gi\|83921595\|ref\|NP_001033088.1\| diazepam binding inhibitor isoform 1 [Mus musculus], gi\|67511482\|emb...	120.0	[0..4]	[87..52]
ACBP_PIG - Acyl-CoA-binding protein OS=Sus scrofa GN=DBI PE=1 SV=2	120.0	[0..1]	[87..1]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQADFDKAA EEVKRLKTQP TDEEMLFIYS HFKQATVGDV NTDRPGLLDL KGKAKWDSWN  60
   61 KLKGTSKENA MKTYVEKVEE LKKKYGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	2cb8A
Description:	No description for 2cb8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits