YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125557379
Organism:	Oryza sativa Indica Group
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125557379.

Description	E-value	Query Range	Subject Range
gi\|68193392, gi\|... - gi\|69274952\|ref\|ZP_00610864.1\| HNH endonuclease [Mesorhizobium sp. BNC1], gi\|68193392\|gb\|EAN08044.1\|...	199.0	[0..95]	[281..1]
gi\|85709598, gi\|... - gi\|85709598\|ref\|ZP_01040663.1\| HNH endonuclease family protein [Erythrobacter sp. NAP1], gi\|85688308...	199.0	[0..74]	[281..3]
gi\|25352678, gi\|... - pir\|\|AI2991 conserved hypothetical protein Atu3539 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17937246, gi\|... - gi\|17937246\|ref\|NP_534035.1\| hypothetical protein Atu3539 [Agrobacterium tumefaciens str. C58], gi\|1...	199.0	[0..95]	[280..1]
gi\|15075659 - gi\|15075659\|emb\|CAC47214.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15966388 - gi\|15966388\|ref\|NP_386741.1\| hypothetical protein SMc00737 [Sinorhizobium meliloti 1021]	199.0	[0..95]	[281..1]
gi\|86283469, gi\|... - gi\|86359367\|ref\|YP_471259.1\| putative endonuclease protein [Rhizobium etli CFN 42], gi\|86283469\|gb\|A...	198.0	[0..95]	[280..1]
gi\|85375659, gi\|... - gi\|85375659\|ref\|YP_459721.1\| HNH endonuclease family protein [Erythrobacter litoralis HTCC2594], gi\|...	197.0	[0..64]	[281..4]
gi\|115258695, gi... - gi\|116254047\|ref\|YP_769885.1\| putative endonuclease family protein [Rhizobium leguminosarum bv. vici...	197.0	[0..95]	[280..1]
gi\|113872532, gi... - gi\|113872532\|ref\|ZP_01412661.1\| conserved hypothetical protein [Sinorhizobium medicae WSM419], gi\|11...	195.0	[0..81]	[281..31]
gi\|78387357, gi\|... - gi\|90422135\|ref\|YP_530505.1\| HNH endonuclease [Rhodopseudomonas palustris BisB18], gi\|90104149\|gb\|AB...	195.0	[0..103]	[280..9]
gi\|91180503, gi\|... - gi\|91221689\|ref\|ZP_01257386.1\| HNH endonuclease family protein [Psychroflexus torquis ATCC 700755], ...	194.0	[0..89]	[280..4]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKVAAPLA FRRDVVVRGT LGGGRRSGVS GLWSNGGGGG GRLVAPPSAP WPARARGKNR  60
   61 SGGGGRSATK DDERAGKDEA AEAVVFVDGE DDEAAIDGDD LSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRGLVLDLSY RPVNVVCWKR AICLEFMAKA DVLEYYDQTV SSPSGSFYIP AVLRVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [160-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELLQVVKRRR VKHSLSRKNI LYRDGFTCQY CSSVDNLTID HVIPTARGGK WEWENLVTAC  60
   61 SRCNSRKGQK TVEQANMKLL KVPKAPKEFD ILAVPLTKAA FRTLKRSQGL PEEWLQYLAR 120
  121 PSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits