YRC Public Data Repository - Protein Structure Prediction

Protein:	GCSH_ECOK1
Organism:	Escherichia coli APEC O1
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCSH_ECOK1.

Description	E-value	Query Range	Subject Range
GCSH_SYMTH - Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1 GCSH_SYMTH - Glycine cleavage system H protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=gcvH PE=...	187.0	[0..1]	[128..1]
GCSH_SHEAM - Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE...	187.0	[0..1]	[129..1]
GCSH_SHELP - Glycine cleavage system H protein OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvH PE=3 S...	184.0	[0..1]	[129..1]
gi\|68229731, gi\|... - gi\|68229731\|ref\|ZP_00568923.1\| Glycine cleavage H-protein [Frankia sp. EAN1pec], gi\|68202722\|gb\|EAN1...	183.0	[0..5]	[129..70]
GCSH_CHRVO - Glycine cleavage system H protein OS=Chromobacterium violaceum GN=gcvH PE=3 SV=1 GCSH_CHRVO - Glycine cleavage system H protein OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM ...	182.0	[0..1]	[126..1]
GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 2... GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH...	182.0	[0..1]	[129..1]
GCSH_HALHL - Glycine cleavage system H protein OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvH PE=3 SV...	182.0	[0..1]	[129..1]
gi\|78064801, gi\|... - gi\|78064801\|ref\|YP_367570.1\| glycine cleavage H-protein [Burkholderia sp. 383], gi\|77965546\|gb\|ABB06...	182.0	[0..1]	[128..29]
gi\|85719356 - gi\|85719356\|gb\|ABC75361.1\| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula]	182.0	[0..2]	[129..25]
GCSH_SHESA - Glycine cleavage system H protein OS=Shewanella sp. (strain ANA-3) GN=gcvH PE=3 SV=1 SO0780 - glycine cleavage system H protein GCSH_SHESM - Glycine cleavage system H protein OS=Shewanella sp. (strain MR-4) GN=gcvH PE=3 SV=1 GCSH_SHEON - Glycine cleavage system H protein OS=Shewanella oneidensis (strain MR-1) GN=gcvH PE=3 SV=1	182.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIPAELKY SKEHEWLRKE ADGTYTVGIT EHAQELLGDM VFVDLPEVGA TVSAGDDCAV  60
   61 AESVKAASDI YAPVSGEIVA VNDALSDSPE LVNSEPYAGG WIFKIKASDE SELESLLDAT 120
  121 AYEALLEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1dxmA
Description:	Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits