YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117646844
Organism:	synthetic construct
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117646844.

Description	E-value	Query Range	Subject Range
gi\|94363657 - gi\|94363657\|ref\|XP_914415.2\| PREDICTED: similar to cyclin fold protein 1 [Mus musculus]	3.0E-77	[1..287]	[352..636]
gi\|73948601 - gi\|73948601\|ref\|XP_848557.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 [Canis familiaris...	4.0E-73	[1..287]	[78..364]
HGNC:23354\|MIM:6... - Y CCNY - cyclin Y gi\|109088721 - gi\|109088721\|ref\|XP_001094187.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 isoform 7 [Ma... gi\|208967727, gi... - gi\|208967727\|dbj\|BAG72509.1\| cyclin Y [synthetic construct], gi\|117644480\|emb\|CAL37735.1\| hypothetic...	2.0E-72	[1..287]	[55..341]
gi\|109088729 - gi\|109088729\|ref\|XP_001094076.1\| PREDICTED: similar to cyclin fold protein 1 isoform 1 isoform 6 [Ma...	3.0E-72	[1..287]	[18..304]
gi\|114630134 - gi\|114630134\|ref\|XP_001150734.1\| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]	4.0E-72	[1..287]	[8..294]
gi\|76632152 - gi\|76632152\|ref\|XP_870071.1\| PREDICTED: similar to cyclin fold protein 1 isoform 2 [Bos taurus]	4.0E-72	[1..287]	[55..341]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFNPSDHPR ASTIFLSKSQ TDVREKRKSL FINHHPPGQI ARKYSSCSTI FLDDSTVSQP  60
   61 NLKYTIKCVA LAIYYHIKNR DPDGRMLLDI FDENLHPLSK SEVPPDYDKH NPEQKQIYRF 120
  121 VRTLFSAAQL TAECAIVTLV YLERLLTYAE IDICPANWKR IVLGAILLAS KVWDDQAVWN 180
  181 VDYCQILKDI TVEDMNELER QFLELLQFNI NVPSSVYAKY YFDLRSLAEA NNLSFPLEPL 240
  241 SRERAHKLEA ISRLCEDKYK DLRRSARKRS ASADNLTLPR WSPAIIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2g9xB
Description:	No description for 2g9xB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits