| Protein: | gi|114642805 |
| Organism: | Pan troglodytes |
| Length: | 386 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114642805.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..386] | [1..386] |
|
|
0.0 | [1..383] | [1..382] |
|
|
0.0 | [1..383] | [1..382] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MNEPTENRLG CSRTPEPDIR LRKGHQLDGT RRGDNDSHQG DLEPILEASV LSSHHKKSSE 60
61 EHEYSDEAPQ EDEGFMGMSP LLQAHHAMEK MEEFVCKVWE GRWRVIPHDV LPDWLKDNDF 120
121 LLHGHRPPMP SFRACFKSIF RIH
|
| Detection Method: |  |
| Confidence: | 1.01 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.48926266746493 | bayes_pls_golite062009 |
| DNA binding | 1.90797220957918 | bayes_pls_golite062009 |
| nucleic acid binding | 1.76259159959262 | bayes_pls_golite062009 |
| protein binding | 1.72899821979103 | bayes_pls_golite062009 |
| acetylcholine receptor binding | 1.17697499608553 | bayes_pls_golite062009 |
| identical protein binding | 0.715609885862042 | bayes_pls_golite062009 |
| receptor binding | 0.362564111690779 | bayes_pls_golite062009 |
|
Region A: Residues: [144-241] |
1 11 21 31 41 51
| | | | | |
1 TETGNIWTHL LGCVFFLCLG IFYMFRPNIS FVAPLQEKVV FGLFFLGAIL CLSFSWLFHT 60
61 VYCHSEGVSR LFSKLDYSGI ALLIMGSFVP WLYYSFYC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [242-386] |
1 11 21 31 41 51
| | | | | |
1 NPQPCFIYLI VICVLGIAAI IVSQWDMFAT PQYRGVRAGV FLGLGLSGII PTLHYVISEG 60
61 FLKAATIGQI GWLMLMASLY ITGAALYAAR IPERFFPGKC DIWFHSHQLF HIFVVAGAFV 120
121 HFHGVSNLQE FRFMIGGGCS EEDAL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
