YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114685480, gi...
Organism:	Pan troglodytes
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114685480, gi....

Description	E-value	Query Range	Subject Range
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	2.0E-40	[1..83]	[79..161]
gi\|109091379 - gi\|109091379\|ref\|XP_001088137.1\| PREDICTED: similar to ribosomal protein S21 [Macaca mulatta]	3.0E-37	[1..83]	[1..83]
RS21_RAT - 40S ribosomal protein S21 OS=Rattus norvegicus GN=Rps21 PE=1 SV=1	7.0E-37	[1..83]	[1..83]
RS21_MOUSE - 40S ribosomal protein S21 OS=Mus musculus GN=Rps21 PE=1 SV=1	7.0E-37	[1..83]	[1..83]
gi\|61369987 - gi\|61369987\|gb\|AAX43423.1\| ribosomal protein S21 [synthetic construct]	9.0E-37	[1..81]	[1..81]
RS21_XENLA - 40S ribosomal protein S21 OS=Xenopus laevis GN=rps21 PE=3 SV=1	1.0E-36	[1..83]	[1..83]
gi\|17390310 - gi\|17390310\|gb\|AAH18140.1\| RPS21 protein [Homo sapiens] gi\|61360074, gi\|... - gi\|61360074\|gb\|AAX41807.1\| ribosomal protein S21 [synthetic construct], gi\|123996707\|gb\|ABM85955.1\| ...	2.0E-36	[1..81]	[1..81]
RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1 RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	2.0E-36	[1..83]	[1..83]
gi\|91093173 - gi\|91093173\|ref\|XP_967937.1\| PREDICTED: similar to ribosomal protein S21e [Tribolium castaneum]	2.0E-36	[1..83]	[1..83]
gi\|73992252 - gi\|73992252\|ref\|XP_852526.1\| PREDICTED: similar to ribosomal protein S21 [Canis familiaris]	2.0E-36	[1..83]	[33..115]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNDAGEFVD LYVPRKCSAS NRIIGAKDHA SIQMNVAEVD KVTGRFNGQF KTYAICGAIR  60
   61 RMGESDDSIL RLAKADGIVS KNF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.79588
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits