YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114561170, gi...
Organism:	Pan troglodytes
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114561170, gi....

Description	E-value	Query Range	Subject Range
gi\|109019387, gi... - gi\|109019387\|ref\|XP_001091697.1\| PREDICTED: brain protein 44 [Macaca mulatta], gi\|109018224\|ref\|XP_0...	194.0	[0..1]	[127..1]
MPC2_PONAB - Mitochondrial pyruvate carrier 2 OS=Pongo abelii GN=MPC2 PE=2 SV=1 BR44_PONPY - Brain protein 44 - Pongo pygmaeus (Orangutan)	188.0	[0..1]	[127..1]
gi\|57089027 - gi\|57089027\|ref\|XP_537209.1\| PREDICTED: similar to Brain protein 44 [Canis familiaris]	188.0	[0..1]	[127..1]
gi\|62859799, gi\|... - gi\|62859799\|ref\|NP_001016695.1\| brain protein 44 [Xenopus (Silurana) tropicalis], gi\|169642463\|gb\|AA...	187.0	[0..4]	[124..2]
gi\|47938856, gi\|... - gi\|47938856\|gb\|AAH71315.1\| Brp44 protein [Danio rerio], gi\|169154836\|emb\|CAQ13558.1\| (novel protein,...	186.0	[0..5]	[127..2]
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	186.0	[0..2]	[126..9]
gi\|7488128, gi\|7... - pir\|\|F71409 probable light induced protein - Arabidopsis thaliana, gi\|7268175\|emb\|CAB78511.1\| light ...	183.0	[0..10]	[125..197]
gi\|27882199, gi\|... - gi\|27882199\|gb\|AAH44023.1\| MGC53394 protein [Xenopus laevis], gi\|148236211\|ref\|NP_001079531.1\| hypot...	181.0	[0..4]	[123..2]
gi\|87619697 - gi\|87619697\|gb\|ABD38642.1\| hypothetical protein [Ictalurus punctatus]	176.0	[0..5]	[124..2]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAGARGLR ATYHRLLDKV ELMLPEKLRP LYNHPAGPRT VFFWAPIMKW GLVCAGLADM  60
   61 ARPAEKLSTA QSAVLMATGF IWSRYSLVII PKNWSLFAVN FFVGAAGASQ LFRIWRYNQE 120
  121 LKAKAHK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.638272
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits