YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126631288, gi...
Organism:	Xenopus laevis
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126631288, gi....

Description	E-value	Query Range	Subject Range
gi\|74267768 - gi\|74267768\|gb\|AAI02866.1\| RPL13 protein [Bos taurus]	357.0	[0..1]	[211..1]
gi\|94381470, gi\|... - gi\|94382983\|ref\|XP_998719.1\| PREDICTED: similar to ribosomal protein L13 [Mus musculus], gi\|94381470...	324.0	[0..1]	[211..1]
RL13_RAT - 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2	323.0	[0..1]	[211..1]
gi\|60653373 - gi\|60653373\|gb\|AAX29381.1\| ribosomal protein L13 [synthetic construct]	319.0	[0..1]	[211..1]
gi\|73956810, gi\|... - gi\|73956810\|ref\|XP_860360.1\| PREDICTED: similar to ribosomal protein L13 isoform 3 [Canis familiaris...	317.0	[0..1]	[211..1]
RL13_CRIGR - 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3	317.0	[0..1]	[211..1]
gi\|109129557 - gi\|109129557\|ref\|XP_001092801.1\| PREDICTED: similar to ribosomal protein L13 [Macaca mulatta]	317.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSRNGMIL KPHFHKDWQQ RVDTWFNQPA RKIRRRKARQ AKARRIAPRP ASGPIRPIVR  60
   61 CPTVRYHTKV RAGRGFSLEE LRVAGIHKKV ARTIGISVDP RRRNKSTESL QANVQRLKEY 120
  121 RSKLILFPRK PSAPKKGDSS AEELKLATQL TGPVMPIRNV YKKEKARVIT EEEKNFKAFA 180
  181 SLRMARANAR LFGIRAKRAK EAAEQDVEKK K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	137.619789
Match:	PF01294.9
Description:	No description for PF01294.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits