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View Structure Prediction Details

Protein: gi|114654443, gi...
Organism: Pan troglodytes
Length: 782 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114654443, gi....

Description E-value Query
Range
Subject
Range
gi|109084634 - gi|109084634|ref|XP_001092942.1| PREDICTED: similar to cleavage and polyadenylation specific factor ...
0.0 [1..782] [1..782]
CPSF2_BOVIN - Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus GN=CPSF2 PE=1 SV=1
0.0 [1..782] [1..782]
gi|47125306 - gi|47125306|gb|AAH70095.1| Cleavage and polyadenylation specific factor 2, 100kDa [Homo sapiens]
0.0 [1..782] [1..782]
gi|73962293 - gi|73962293|ref|XP_537353.2| PREDICTED: similar to cleavage and polyadenylation specific factor 2 is...
0.0 [1..782] [1..782]
gi|157822735, gi... - ref|XP_216766.2| similar to cleavage and polyadenylation specificity factor [Rattus norvegicus], gi|...
0.0 [1..782] [1..782]
CPSF2_MOUSE - Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus GN=Cpsf2 PE=1 SV=1
0.0 [1..782] [1..782]
CPSF2_XENLA - Cleavage and polyadenylation specificity factor subunit 2 OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
0.0 [1..782] [1..783]
gi|60098929, gi|... - gi|71894931|ref|NP_001026379.1| cleavage and polyadenylation specific factor 2 [Gallus gallus], gi|6...
0.0 [1..782] [1..782]

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Predicted Domain #1
Region A:
Residues: [1-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIKLTTL SGVQEESALC YLLQVDEFRF LLDCGWDEHF SMDIIDSLRK HVHQIDAVLL  60
   61 SHPDPLHLGA LPYAVGKLGL NCAIYATIPV YKMGQMFMYD LYQSRHNTED FTLFTLDDVD 120
  121 AAFDKIQQLK FSQIVNLKGK GHGLSITPLP AGHMIGGTIW KIVKDGEEEI VYAVDFNHKR 180
  181 EIHLNGCSLE MLSRPSLLIT DSFNATYVQP RRKQRDEQLL TNVLETLRGD GNVLIAVDTA 240
  241 GRVLELAQLL DQIWRTKDAG LGVYSLALLN NVSYNVVEFS KSQVEWMSDK LMRCFEDKRN 300
  301 NPFQFRHLSL CHGLSDLARV PSPKVVLASQ PDLECGFSRD LFIQWCQDPK NSIILTYRTT 360
  361 PGTLARFLID NPSEKITEIE LRKRVKLEGK ELEEYLEKEK LKKEAAKKLE QSKEADIDSS 420
  421 DESDIEEDID QPSAHKTKHD LMMKGEGSRK GSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.39794
Match: 2i7tA
Description: No description for 2i7tA was found.

Predicted Domain #2
Region A:
Residues: [454-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKQAKKSYPM FPAPEERIKW DEYGEIIKPE DFLVPELQAT EEEKSKLESG LTNGDEPMDQ  60
   61 DLSDVPTKCI STTESIEIKA RVTYIDYEGR SDGDSIKKII NQMKPRQLII VHGPPEASQD 120
  121 LAECCRAFGG KDIKVYMPKL HETVDATSET HIYQVRLKDS LVSSLQFCKA KDAELAWIDG 180
  181 VLDMRVSKVD TGVILEEGEL KDDGEDSEM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.21
Match: 2i7xA
Description: No description for 2i7xA was found.

Predicted Domain #3
Region A:
Residues: [663-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVEAPSDSSV IAQQKAMKSL FGDDEKETGE ESEIIPTLEP LPPHEVPGHQ SVFMNEPRLS  60
   61 DFKQVLLREG IQAEFVGGVL VCNNQVAVRR TETGRIGLEG CLCQDFYRIR DLLYEQYAIV 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.564 a.77.1 DEATH domain
View Download 0.516 a.60.1 SAM/Pointed domain
View Download 0.497 d.95.2 Homing endonucleases
View Download 0.508 d.94.1 HPr-like
View Download 0.503 d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle