YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114619677
Organism:	Pan troglodytes
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114619677.

Description	E-value	Query Range	Subject Range
gi\|60652549, gi\|... - gi\|60652549\|gb\|AAX28969.1\| eukaryotic translation initiation factor 4E binding protein 1 [synthetic ...	187.0	[0..1]	[118..1]
gi\|73979318 - gi\|73979318\|ref\|XP_549448.2\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi...	180.0	[0..1]	[118..1]
4EBP1_BOVIN - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Bos taurus GN=EIF4EBP1 PE=3 SV=1	178.0	[0..1]	[118..1]
4EBP1_RAT - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Rattus norvegicus GN=Eif4ebp1 PE=1 ...	178.0	[0..1]	[118..1]
gi\|109086183 - gi\|109086183\|ref\|XP_001091933.1\| PREDICTED: eukaryotic translation initiation factor 4E binding prot...	177.0	[0..1]	[110..1]
gi\|31542600, gi\|... - gi\|31542600\|ref\|NP_031944.2\| eukaryotic translation initiation factor 4E binding protein 1 [Mus musc...	173.0	[0..1]	[118..1]
gi\|47086433, gi\|... - gi\|47086433\|ref\|NP_997968.1\| eukaryotic translation initiation factor 4E binding protein 2 [Danio re...	166.0	[0..3]	[118..1]
gi\|39794331, gi\|... - gi\|45361513\|ref\|NP_989333.1\| eukaryotic translation initiation factor 4E binding protein 2 [Xenopus ...	165.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGSSCSQT PSRAIPATRR VVLGDGVQLP PGDYSTTPGG TLFSTTPGGT RIIYDRKFLM  60
   61 ECRNSPVTKT PPRDLPTIPG VTSPSSDEPP MEASQSHLRN SPEDKRAGGE ESQFEMDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.275724
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits