YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123995335, gi...
Organism:	synthetic construct
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123995335, gi....

Description	E-value	Query Range	Subject Range
gi\|109122478 - gi\|109122478\|ref\|XP_001083378.1\| PREDICTED: similar to Cytochrome b5 [Macaca mulatta]	7.0E-43	[1..134]	[1..134]
CYB5_PIG - Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3 gi\|11374014 - pir\|\|CBPG5 cytochrome b5, microsomal splice form [validated] - pig	7.0E-43	[1..134]	[1..134]
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	2.0E-42	[1..131]	[1..131]
CYB5_RAT - Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2	2.0E-42	[1..134]	[1..134]
CYB5_RABIT - Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4	3.0E-42	[1..134]	[1..134]
gi\|57031552 - gi\|57031552\|ref\|XP_533373.1\| PREDICTED: similar to Cytochrome b5 [Canis familiaris]	4.0E-42	[1..134]	[1..134]
gi\|114673566 - gi\|114673566\|ref\|XP_001135885.1\| PREDICTED: similar to Cytochrome b5 isoform 4 [Pan troglodytes]	4.0E-42	[1..134]	[1..134]
CYB5_HORSE - Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3	4.0E-42	[1..134]	[1..134]
CYB5_BOVIN - Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3	5.0E-42	[1..134]	[1..134]
gi\|226449 - gi\|226449\|prf\|\|1513199A cytochrome b5	1.0E-41	[2..134]	[1..133]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQSDEAVK YYTLEEIQKH NHSKSTWLIL HHKVYDLTKF LEEHPGGEEV LREQAGGDAT  60
   61 ENFEDVGHST DAREMSKTFI IGELHPDDRP KLNKPPETLI TTIDSSSSWW TNWVIPAISA 120
  121 VAVALMYRLY MAED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2i96A
Description:	No description for 2i96A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits