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View Structure Prediction Details

Protein: RL6_OCEIH
Organism: Oceanobacillus iheyensis
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL6_OCEIH.

Description E-value Query
Range		 Subject
Range
RL6_GEOSE - 50S ribosomal protein L6 OS=Geobacillus stearothermophilus GN=rplF PE=1 SV=2
RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus (strain HTA426) GN=rplF PE=3 SV=1
RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus GN=rplF PE=3 SV=1
gi|221089337, gi... - gi|221089337|ref|ZP_03558857.1| ribosomal protein L6 [Geobacillus sp. Y412MC61], gi|220706763|gb|EED...
gi|229500490, gi... - gi|229500490|ref|ZP_04394151.1| ribosomal protein L6 [Geobacillus sp. Y412MC52], gi|229328607|gb|EEN...
 252.0 [0..1] [178..1]
gi|143419 - gi|143419|gb|AAA22700.1| ribosomal protein L6 [Geobacillus stearothermophilus]
 249.0 [0..1] [178..1]
RL6_SYMTH - 50S ribosomal protein L6 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplF PE=3 SV=1
RL6_SYMTH - 50S ribosomal protein L6 OS=Symbiobacterium thermophilum GN=rplF PE=3 SV=1
 243.0 [0..1] [178..1]
RL6_PSEF5 - 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplF PE=3 SV=1
 241.0 [0..1] [177..1]
RL6_PSEPF - 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplF PE=3 SV=1
 240.0 [0..1] [177..1]
RL6_MARHV - 50S ribosomal protein L6 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8...
 240.0 [0..1] [177..1]
RL6_MANSM - 50S ribosomal protein L6 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplF PE=3 SV=1
 240.0 [0..1] [177..1]
RL6_THICR - 50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1
 239.0 [0..1] [177..1]

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Predicted Domain #1
Region A:
Residues: [1-178] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVGLKPVE IPEGVELKLD NNTVTVKGPK GELSRELHPD MKINIEDNVL TVERPSDHKE  60
   61 HRALHGTTRS LINNMVIGVS KGFEKSLEII GVGYRAQKQG DKTVINAGYS HPVELEAIDG 120
  121 IEIEVPKNTQ ITVKGIDKEL VGAIAANIRA IRPPEPYKGK GIRYTDEYVR RKEGKTAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.30103
Match: 1c04B
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.94614353072897 bayes_pls_golite062009
structural molecule activity 9.3691467221987 bayes_pls_golite062009
binding 1.17169736942297 bayes_pls_golite062009
protein binding 0.574304313407193 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle