YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117644356, gi...
Organism:	synthetic construct
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117644356, gi....

Description	E-value	Query Range	Subject Range
YIPF1_PONAB - Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1 YIPF1_PONPY - Protein YIPF1 - Pongo pygmaeus (Orangutan)	0.0	[1..306]	[1..306]
gi\|114556685 - gi\|114556685\|ref\|XP_001148917.1\| PREDICTED: Yip1 domain family, member 1 [Pan troglodytes]	0.0	[1..306]	[1..306]
gi\|109004893 - gi\|109004893\|ref\|XP_001112998.1\| PREDICTED: similar to Yip1 domain family, member 1 [Macaca mulatta]	0.0	[1..306]	[1..306]
gi\|76613824, gi\|... - gi\|76613832\|ref\|XP_589144.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Bos tauru...	0.0	[1..306]	[1..306]
YIPF1_RAT - Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1	0.0	[1..306]	[1..306]
YIPF1_MOUSE - Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1	0.0	[1..306]	[1..306]
gi\|73956309, gi\|... - gi\|73956313\|ref\|XP_546701.2\| PREDICTED: similar to Yip1 domain family, member 1 isoform 1 [Canis fam...	0.0	[1..291]	[1..291]
gi\|50751630 - gi\|50751630\|ref\|XP_422486.1\| PREDICTED: similar to hypothetical protein DJ167A19.1 [Gallus gallus]	5.0E-97	[1..304]	[104..407]

Back

Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVDDLQFE EFGNAATSLT ANPDATTVNI EDPGETPKHQ PGSPRGSGRE EDDELLGNDD  60
   61 SDKTELL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGQKKSSPFW TFEYYQTFFD VDTYQVFDRI KGSLLPIPGK NFVRLYIRSN PDLYGPFWIC  60
   61 ATLVFAIAIS GNLSNFLIHL GEKTYHYVPE FRKVSIAATI IYAYAWLVPL ALWGFLMWRN 120
  121 SKVMNIVSYS FLEIVCVYGY SLFIYIPTAI LWIIPQKAVR WILVMIALGI SGSLLAMTFW 180
  181 PAVREDNRRV ALATIVTIVL LHMLLSVGCL AYFFDAPEMD HLPTTTATPN QTVAAAKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	78.481486
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits