YRC Public Data Repository - Protein Structure Prediction

Protein:	KITH_RAT
Organism:	Rattus norvegicus
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KITH_RAT.

Description	E-value	Query Range	Subject Range
TK1 - thymidine kinase 1, soluble gi\|60656371, gi\|... - gi\|60656371\|gb\|AAX32749.1\| thymidine kinase 1 [synthetic construct], gi\|60656369\|gb\|AAX32748.1\| thym... HGNC:11830\|MIM:1... - kinase 1, soluble ENSPTRT00000017814 - null	180.0	[0..1]	[121..1]
gi\|60653309, gi\|... - gi\|60653309\|gb\|AAX29349.1\| thymidine kinase 1 soluble [synthetic construct], gi\|33303757\|gb\|AAQ02392...	180.0	[0..1]	[121..1]
gi\|114670779 - gi\|114670779\|ref\|XP_001145198.1\| PREDICTED: similar to Thymidine kinase 1, soluble [Pan troglodytes]	180.0	[0..1]	[121..43]
gi\|152941146, gi... - gi\|76645638\|ref\|XP_580808.2\| PREDICTED: similar to Thymidine kinase, cytosolic isoform 1 [Bos taurus...	179.0	[0..1]	[121..29]
gi\|109118482 - gi\|109118482\|ref\|XP_001107822.1\| PREDICTED: thymidine kinase 1, soluble isoform 1 [Macaca mulatta]	178.0	[0..1]	[121..1]
gi\|73964971 - gi\|73964971\|ref\|XP_540462.2\| PREDICTED: similar to Thymidine kinase, cytosolic [Canis familiaris]	178.0	[0..1]	[121..1]
gi\|149054919, gi... - gi\|158186787\|ref\|NP_434687.1\| thymidine kinase 1 [Rattus norvegicus], gi\|149054919\|gb\|EDM06736.1\| rC...	174.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYINLPTVL PISPSKTRGQ IQVILGPMFS GKSTELMRRV RRFQIAQYKC LVIKYAKDTR  60
   61 YSNSFSTHDR NTMDALPACM LKDVAQEALG VAVIGIDEGQ FFPDIVDFCE TMANTGKTVI 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	2orvA
Description:	No description for 2orvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits