YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125528873, gi...
Organism:	Oryza sativa Indica Group
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125528873, gi....

Description	E-value	Query Range	Subject Range
gi\|29612581 - gi\|29612581\|gb\|AAH49478.1\| Zgc:66168 protein [Danio rerio]	134.0	[0..18]	[97..14]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	133.0	[0..17]	[97..76]
gi\|113578271, gi... - gi\|115462241\|ref\|NP_001054720.1\| Os05g0160200 [Oryza sativa (japonica cultivar-group)], gi\|113578271...	133.0	[0..2]	[97..7]
gi\|73986078 - gi\|73986078\|ref\|XP_533870.2\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusion p...	133.0	[0..6]	[96..44]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	133.0	[0..17]	[97..22]
gi\|5523975 - gi\|5523975\|gb\|AAD44040.1\|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]	132.0	[0..21]	[97..177]
gi\|39725571 - gi\|39725571\|dbj\|BAD04938.1\| poryprotein [Bovine viral diarrhea virus T-20]	132.0	[0..21]	[97..1464]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAGEEDKK PAGGEGGGAH INLKVKGQDG NEVFFRIKRS TQLKKLMNAY CDRQSVDMNA  60
   61 IAFLFDGRRL RGEQTPDELE MEDGDEIDAM LHQTGGCLPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	2awtA
Description:	No description for 2awtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits