YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114600407
Organism:	Pan troglodytes
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114600407.

Description	E-value	Query Range	Subject Range
gi\|74136319, gi\|... - gi\|74136319\|ref\|NP_001028049.1\| chemokine (C-C motif) ligand 28 [Macaca mulatta], gi\|25987922\|gb\|AAN...	5.0E-33	[1..127]	[1..127]
gi\|14029655, gi\|... - gi\|16758516\|ref\|NP_446152.1\| CC chemokine CCL28 [Rattus norvegicus], gi\|14029655\|gb\|AAK52773.1\|AF361...	1.0E-27	[1..124]	[1..123]
CCL28_MOUSE - C-C motif chemokine 28 OS=Mus musculus GN=Ccl28 PE=1 SV=1	2.0E-26	[1..123]	[1..123]
gi\|67010007, gi\|... - gi\|67010007\|ref\|NP_001019866.1\| chemokine (C-C motif) ligand 28 [Sus scrofa], gi\|60686933\|gb\|AAX3554...	6.0E-25	[18..127]	[18..127]
gi\|76670282 - gi\|76670282\|ref\|XP_615382.2\| PREDICTED: similar to Small inducible cytokine A28 precursor (CCL28) (M...	1.0E-24	[15..127]	[170..282]
CCL28_CANLF - C-C motif chemokine 28 OS=Canis lupus familiaris GN=CCL28 PE=2 SV=1	3.0E-24	[4..127]	[6..128]
CCL4_CHICK - C-C motif chemokine 4 homolog OS=Gallus gallus GN=CCL4 PE=3 SV=4	3.0E-23	[1..89]	[1..88]
gi\|27802635 - gi\|27802635\|gb\|AAO21207.1\| small inducible cytokine SCYA105 [Paralabidochromis chilotes]	7.0E-23	[1..109]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQRGLAIVA LAVCAALHAS EAILPIASSC CTEVSHHISR RLLERVNMCR IQRADGDCDL  60
   61 AAVILHVKRR RICVSPHNHT VKQWMKVQAA KKNGKGNVCH RKKHHGKRNS NRAHQGKHET 120
  121 YGHKTPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1j8iA
Description:	Lymphotactin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits