YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114587574
Organism:	Pan troglodytes
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114587574.

Description	E-value	Query Range	Subject Range
gi\|60811918 - gi\|60811918\|gb\|AAX36190.1\| ribonuclease P 14kDa subunit [synthetic construct]	210.0	[0..1]	[124..1]
gi\|73985286 - gi\|73985286\|ref\|XP_849188.1\| PREDICTED: similar to ribonuclease P 14kDa subunit [Canis familiaris]	205.0	[0..1]	[124..1]
RPP14_MOUSE - Ribonuclease P protein subunit p14 OS=Mus musculus GN=Rpp14 PE=1 SV=1	203.0	[0..4]	[124..2]
gi\|61874790, gi\|... - gi\|76648780\|ref\|XP_869659.1\| PREDICTED: similar to ribonuclease P 14kDa subunit isoform 2 [Bos tauru...	203.0	[0..1]	[124..1]
gi\|109502165, gi... - gi\|62661158\|ref\|XP_341296.2\| PREDICTED: similar to ribonuclease P 14kDa subunit [Rattus norvegicus],...	199.0	[0..4]	[124..2]
gi\|109038068 - gi\|109038068\|ref\|XP_001095163.1\| PREDICTED: similar to ribonuclease P 14kDa subunit [Macaca mulatta]	167.0	[0..27]	[124..117]
gi\|115530771 - gi\|115530771\|emb\|CAL49377.1\| ribonuclease P 14kDa subunit [Xenopus tropicalis]	158.0	[0..3]	[124..15]
gi\|27820041 - gi\|27820041\|gb\|AAO25052.1\| GM02245p [Drosophila melanogaster]	154.0	[0..14]	[108..49]
gi\|94732553, gi\|... - gi\|94732553\|emb\|CAK05043.1\| novel protein similar to vertebrate ribonuclease P 14kDa subunit (RPP14)...	142.0	[0..5]	[121..4]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAPAATYER VVYKNPSEYH YMKVCLEFQD CGVGLNAAQF KQLLISAVKD LFGEVDAALP  60
   61 LDILTYEEKT LSAILRICSS GLVKLWSSLT LLGSYKGKKC AFRVIQVSPF LLALSGNSRE 120
  121 LVLD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.12
Match:	2av5A
Description:	Crystal structure of Pyrococcus furiosus Pop5, an archaeal Ribonuclease P protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits