YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125561305
Organism:	Oryza sativa Indica Group
Length:	964 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125561305.

Description	E-value	Query Range	Subject Range
gi\|27948554 - gi\|27948554\|gb\|AAO25631.1\| phosphoenolpyruvate carboxylase [Oryza sativa (indica cultivar-group)]	1341.0	[0..1]	[964..1]
gi\|7436543, gi\|2... - pir\|\|T09846 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 1 - upland cotton, gi\|2266947\|gb\|AAB80714....	1317.0	[0..1]	[964..1]
gi\|45505269 - gi\|45505269\|gb\|AAS67006.1\| Phosphoenolpyruvate carboxylase [Glycine max]	1306.0	[0..2]	[964..3]
CAPP_PICAB - Phosphoenolpyruvate carboxylase OS=Picea abies GN=PPC PE=2 SV=1	1305.0	[0..1]	[964..1]
gi\|20162465 - gi\|20162465\|gb\|AAM14596.1\|AF494191_1 phosphoenolpyruvate carboxylase FB966 [Flaveria brownii]	1298.0	[0..1]	[964..1]
gi\|92874670 - gi\|92874670\|gb\|ABE82904.1\| Phosphoenolpyruvate carboxylase [Medicago truncatula]	1297.0	[0..2]	[964..3]
gi\|20162467 - gi\|20162467\|gb\|AAM14597.1\|AF494192_1 phosphoenolpyruvate carboxylase FPUB966 [Flaveria pubescens]	1297.0	[0..1]	[964..1]
gi\|20141087 - gi\|20141087\|gb\|AAK58635.2\|AF271161_1 phosphoenolpyruvate carboxylase isoform 1 [Hydrilla verticillat...	1296.0	[0..3]	[964..9]
gi\|763097, gi\|10... - gi\|763097\|emb\|CAA88829.1\| phosphoenolpyruvate carboxylase [Flaveria pringlei], pir\|\|S52853 phosphoen...	1296.0	[0..1]	[964..1]

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Predicted Domain #1

Region A:
Residues: [1-964]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKVEKMAS IDAQLRMLAP AKLSEDDKLV EYDALLLDRF LDILQDLHGD DLRELVQECY  60
   61 EIAAEYEGKH DSQKLDELGN MLTSLDPGDS IVMAKAFSHM LNLANLAEEV QIAYRRRIKL 120
  121 KKGDFADENS ALTESDIEET FKRLVVDLKK SPAEVFDALK SQTVDLVLTA HPTQSVRRSL 180
  181 LQKHSRIRNC LVQLYSKDIT PDDKQELDEA LQREIQAAFR TDEIRRTQPT PQDEMRAGMS 240
  241 YFHETIWKGV PKFLRRLDTA LKNIGIDERV PYNAPLIQFS SWMGGDRDGN PRVTPEVTRD 300
  301 VCLLARMMAS NLYCSQIEDL MFELSMWRCN DELRARADEL HLSSKKDAKH YIEFWKKVPP 360
  361 SEPYRVVLGD VRDKLYNTRE RARQLLSSGY SDIPEETTLT SVEQFLEPLE LCYRSLCDCG 420
  421 DRVIADGTLL DFLRQVSTFG LCLVRLDIRQ ESDRHTDVLD AITTYLGIGS YREWSEERRQ 480
  481 DWLLSELNGK RPLFGPDLPK TDEIADVLDT FRVIAELPAD NFGAYIISMA TAPSDVLAVE 540
  541 LLQRECHVKT PLRVVPLFEK LADLESAPAA VARLFSIDWY RERINGKQEV MIGYSDSGKD 600
  601 AGRLSAAWQL YKSQEELINV AKEFGVKLTM FHGRGGTVGR GGGPTHLAIL SQPPDTIHGS 660
  661 LRVTVQGEVI EQSFGEEHLC FRTLQRFTAA TLEHGMHPPI APKPEWRALL DEMAVVATKE 720
  721 YRSIVFQEPR FVEYFRLATP EMEYGRMNIG SRPSKRKPSG GIESLRAIPW IFAWTQTRFH 780
  781 LPVWLGFGSA FKHILEKDIR NLHMLQEMYN EWPFFRVTID LVEMVFAKGD PGIAALYDKL 840
  841 LVSEELWPLG EKLRANCEET KQLLLQVAGH KDLLEGDLYL KQRLRLRNAY ITTLNVCQAY 900
  901 TMKRIRDPDY HVTLRPHMSK EIMDWSKPAA ELVKLNPTSE YAPGLEDTLI LTMKGIAAGM 960
  961 QNTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1jqoA
Description:	Phosphoenolpyruvate carboxylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits