YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114627762
Organism:	Pan troglodytes
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114627762.

Description	E-value	Query Range	Subject Range
gi\|109149685 - gi\|109149685\|ref\|XP_001085279.1\| PREDICTED: similar to mitochondrial ribosomal protein L41 [Macaca m...	2.0E-53	[1..137]	[1..137]
RM41_MOUSE - 39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=1 SV=1	2.0E-51	[1..137]	[1..135]
gi\|76646691 - gi\|76646691\|ref\|XP_582978.2\| PREDICTED: similar to mitochondrial ribosomal protein L41 (predicted) [...	4.0E-50	[1..137]	[94..228]
gi\|73967437 - gi\|73967437\|ref\|XP_548346.2\| PREDICTED: similar to mitochondrial ribosomal protein L41 (predicted) [...	3.0E-49	[1..137]	[1..135]
RM41_RAT - 39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=1	7.0E-49	[1..137]	[1..134]
gi\|50757492 - gi\|50757492\|ref\|XP_415536.1\| PREDICTED: similar to Mrpl41-prov protein [Gallus gallus]	9.0E-42	[1..137]	[1..135]
RM41_DANRE - 39S ribosomal protein L41, mitochondrial OS=Danio rerio GN=mrpl41 PE=2 SV=1	9.0E-39	[1..137]	[1..135]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLAAAARC LVRGADRMSK WTSKRGPRSF RGRKGRGAKG IGFLTSGWRF VQIKEMVPEF  60
   61 VVPDLTGFKL KPYVSYLAPE SEETPLTAAQ LFSEAVAPAI EKDFKDGTFD PDNLEKYGFE 120
  121 PTQEGKLFQL YPRNFLR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits