YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114656176, gi...
Organism:	Pan troglodytes
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114656176, gi....

Description	E-value	Query Range	Subject Range
gi\|73999753 - gi\|73999753\|ref\|XP_849017.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Canis famil...	117.0	[0..1]	[64..103]
NOP10_DANRE - H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1	117.0	[0..1]	[64..1]
AGAP005149-PA - H/ACA ribonucleoprotein complex subunit 3\|protein_coding\|2L:10577719:10577972:-1\|gene:AGAP005149 gi\|55240537, gi\|... - gi\|58385557\|ref\|XP_314037.2\| AGAP005149-PA [Anopheles gambiae str. PEST], gi\|55240537\|gb\|EAA09445.2\|...	114.0	[0..1]	[63..1]
gi\|157116047, gi... - gi\|157116047\|ref\|XP_001658356.1\| hypothetical protein AaeL_AAEL007431 [Aedes aegypti], gi\|108876656\|...	112.0	[0..1]	[63..1]
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	112.0	[0..1]	[60..1]
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	112.0	[0..1]	[64..1]
gi\|73587177, gi\|... - gi\|76627351\|ref\|XP_873856.1\| PREDICTED: hypothetical protein [Bos taurus], gi\|73587177\|gb\|AAI03379.1...	112.0	[0..1]	[64..1]
CG7637-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7637 (CG7637, FBgn0033548). It is a protein... gi\|195333227, gi... - gi\|195333227\|ref\|XP_002033293.1\| GM20494 [Drosophila sechellia], gi\|194125263\|gb\|EDW47306.1\| GM20494... gi\|190659358, gi... - gi\|194884175\|ref\|XP_001976171.1\| GG22719 [Drosophila erecta], gi\|190659358\|gb\|EDV56571.1\| GG22719 [D... gi\|220951258, gi... - gi\|220959964\|gb\|ACL92525.1\| CG7637-PA [synthetic construct], gi\|220951258\|gb\|ACL88172.1\| CG7637-PA [... gi\|195582268, gi... - gi\|195582268\|ref\|XP_002080950.1\| GD25957 [Drosophila simulans], gi\|194192959\|gb\|EDX06535.1\| GD25957 ... gi\|195483637, gi... - gi\|195483637\|ref\|XP_002090369.1\| GE13075 [Drosophila yakuba], gi\|194176470\|gb\|EDW90081.1\| GE13075 [D... gi\|194145371, gi... - gi\|195383720\|ref\|XP_002050574.1\| GJ20125 [Drosophila virilis], gi\|194145371\|gb\|EDW61767.1\| GJ20125 [...	112.0	[0..1]	[63..1]
gi\|62859217, gi\|... - gi\|62859217\|ref\|NP_001016163.1\| nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs) [X...	112.0	[0..1]	[64..1]
gi\|91080289 - gi\|91080289\|ref\|XP_973962.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	111.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLQYYLNEQ GDRVYTLKKF DPMGQQTCSA HPARFSPDDK YSRHRITIKK RFKVLMTQQP  60
   61 RPVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1y2yA
Description:	Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits