YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114662381
Organism:	Pan troglodytes
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114662381.

Description	E-value	Query Range	Subject Range
gi\|33585525 - gi\|33585525\|gb\|AAH55730.1\| Cbln1 protein [Mus musculus]	8.0E-49	[12..193]	[30..211]
gi\|1093743 - gi\|1093743\|prf\|\|2104382A pre-cerebellin gi\|913895 - gi\|913895\|gb\|AAB33613.1\| cerebellin 1, Cbln1 [mice, brain, Peptide Partial, 193 aa]	2.0E-48	[12..193]	[12..193]
CBLN1_RAT - Cerebellin-1 OS=Rattus norvegicus GN=Cbln1 PE=1 SV=2 gi\|73950418 - gi\|73950418\|ref\|XP_854506.1\| PREDICTED: similar to cerebellin 1 precursor protein [Canis familiaris] CBLN1_BOVIN - Cerebellin-1 OS=Bos taurus GN=CBLN1 PE=1 SV=1 gi\|149699058 - gi\|149699058\|ref\|XP_001488699.1\| PREDICTED: similar to Cerebellin-1 precursor (Precerebellin) [Equus...	4.0E-47	[18..193]	[18..193]
gi\|109128448 - gi\|109128448\|ref\|XP_001082005.1\| PREDICTED: similar to cerebellin 1 precursor protein [Macaca mulatt...	8.0E-47	[18..193]	[18..193]
gi\|76640389 - gi\|76640389\|ref\|XP_876031.1\| PREDICTED: similar to cerebellin 1 precursor protein [Bos taurus]	2.0E-45	[18..193]	[123..298]
gi\|49257616, gi\|... - gi\|49257616\|gb\|AAH74247.1\| MGC83990 protein [Xenopus laevis], gi\|147905600\|ref\|NP_001086139.1\| MGC83...	3.0E-45	[2..193]	[28..215]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVLELLLL GAAWLAGPAR GQNETEPIVL EGKCLVVCDS NPTSDPTGTA LGISVRSGSA  60
   61 KVAFSAIRST NHEPSEMSNR TMIIYFDQVL VNIGNNFDSE RSTFIAPRKG IYSFNFHVVK 120
  121 VYNRQTIQVS LMLNGWPVIS AFAGDQDVTR EAASNGVLIQ MEKGDRAYLK LERGNLMGGW 180
  181 KYSTFSGFLV FPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1gr3A
Description:	Collagen X NC1 trimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.06501078410197	bayes_pls_golite062009
protein binding	0.971034959057578	bayes_pls_golite062009
receptor binding	0.732912948930345	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: