YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114613110
Organism:	Pan troglodytes
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114613110.

Description	E-value	Query Range	Subject Range
gi\|50603688, gi\|... - gi\|50603688\|gb\|AAH77484.1\| MGC82549 protein [Xenopus laevis], gi\|148233078\|ref\|NP_001086809.1\| MGC82...	1.0E-77	[1..253]	[1..253]
gi\|47223880 - gi\|47223880\|emb\|CAG06057.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-77	[1..253]	[1..253]
gi\|44890340, gi\|... - gi\|44890340\|gb\|AAH66680.1\| Phosphoglycerate mutase 1a [Danio rerio], gi\|38488700\|ref\|NP_942099.1\| bi...	3.0E-77	[1..253]	[1..253]
PGAM1_CHICK - Phosphoglycerate mutase 1 OS=Gallus gallus GN=PGAM1 PE=1 SV=3	1.0E-76	[1..253]	[1..253]
gi\|91092672 - gi\|91092672\|ref\|XP_971117.1\| PREDICTED: similar to putative phosphoglycerate mutase [Tribolium casta...	1.0E-74	[1..253]	[1..256]

Back

Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHRLVMVR HGESTWNQEN RFCGWFDAEL SEKGTEEAKR GAKAIKDAKM EFDICYTSVL  60
   61 KRAIRTLWAI LDGTDQMWLP VVRTWRLNER HYGGLTGLNK AETAAKHGEE QVKIWRRSFD 120
  121 IPPPPMDEKH PYYNSISKER RYAGLKPGEL PTCESLKDTI ARALPFWNEE IVPQIKAGKR 180
  181 VLIAAHGNSL RGIVKHLEGM SDQAIMELNL PTGIPIVYEL NKELKPTKPM QFLGDEETVR 240
  241 KAMEAVAAQG KAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1yfkA
Description:	Crystal structure of human B type phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits