YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117558824, gi...
Organism:	Rattus norvegicus
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117558824, gi....

Description	E-value	Query Range	Subject Range
gi\|35210506 - gi\|35210506\|dbj\|BAC87883.1\| casein kinase I alpha S [Carassius auratus]	287.0	[0..1]	[337..1]
gi\|125836373, gi... - gi\|68375088\|ref\|XP_709617.1\| PREDICTED: similar to casein kinase 1alpha S isoform 4 [Danio rerio], g...	287.0	[0..1]	[337..1]
gi\|19923746, gi\|... - ref\|NP_001883.3\| casein kinase 1, alpha 1 [Homo sapiens], gi\|14250532\|gb\|AAH08717.1\| Casein kinase ...	286.0	[0..1]	[337..1]
tr\|V9HW00\|V9HW00... - Epididymis secretory sperm binding protein Li 77p (Fragment) OS=Homo sapiens GN=HEL-S-77p PE=2 SV=1 gi\|60812329, gi\|... - gi\|60812348\|gb\|AAX36208.1\| casein kinase 1 alpha 1 [synthetic construct], gi\|60812329\|gb\|AAX36207.1\|...	286.0	[0..1]	[337..1]
KC1A_XENLA - Casein kinase I isoform alpha OS=Xenopus laevis GN=csnk1a1 PE=2 SV=1 gi\|54696520 - gi\|54696520\|gb\|AAV38632.1\| casein kinase 1, alpha 1 [Homo sapiens] KC1A_CHICK - Casein kinase I isoform alpha OS=Gallus gallus GN=CSNK1A1 PE=2 SV=1 gi\|61364947 - gi\|61364947\|gb\|AAX42629.1\| casein kinase 1 alpha 1 [synthetic construct]	286.0	[0..1]	[337..1]
gi\|149064406, gi... - gi\|149064408\|gb\|EDM14611.1\| casein kinase 1, alpha 1, isoform CRA_e [Rattus norvegicus], gi\|14906440... gi\|114602755 - gi\|114602755\|ref\|XP_001163637.1\| PREDICTED: casein kinase 1, alpha 1 isoform 2 [Pan troglodytes] gi\|73953681 - gi\|73953681\|ref\|XP_867638.1\| PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) ... E9Q4G7, IPI:IPI0... - Tax_Id=10090 Splice Isoform 2 of Casein kinase I isoform alpha, Uncharacterized protein OS=Mus muscu... gi\|119582179 - gi\|119582179\|gb\|EAW61775.1\| casein kinase 1, alpha 1, isoform CRA_h [Homo sapiens] tr\|F6SHV6\|F6SHV6... - Casein kinase 1 alpha 1 OS=Equus caballus OX=9796 GN=CSNK1A1 PE=3 SV=1 gi\|109079310 - gi\|109079310\|ref\|XP_001106455.1\| PREDICTED: casein kinase 1, alpha 1 isoform 3 [Macaca mulatta]	285.0	[0..1]	[336..1]
gi\|27695237, gi\|... - gi\|27695237\|gb\|AAH43956.1\| Csnk1a1-prov protein [Xenopus laevis], gi\|147905704\|ref\|NP_001080546.1\| c...	284.0	[0..1]	[337..1]
gi\|74220573 - gi\|74220573\|dbj\|BAE31499.1\| unnamed protein product [Mus musculus]	284.0	[0..1]	[337..1]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSGSKAE FIVGGKYKLV RKIGSGSFGD IYLAINITNG EEVAVKLESQ KARHPQLLYE  60
   61 SKLYKILQGG VGIPHIRWYG QEKDYNVLVM DLLGPSLEDL FNFCSRRFTM KTVLMLADQM 120
  121 ISRIEYVHTK NFIHRDIKPD NFLMGIGRHC NKLFLIDFGL AKKYRDNRTR QHIPYREDKN 180
  181 LTGTARYASI NAHLGIEQSR RDDMESLGYV LMYFNRTSLP WQGLKAATKK QKYEKISEKK 240
  241 MSTPVEVLCK GFPAEFAMYL NYCRGLRFEE APDYMYLRQL FRILFRTLNH QYDYTFDWTM 300
  301 LKQKAAQQAA SSSGQGQQAQ TPTGKQTDKT KSNMKGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	1ckiA
Description:	Casein kinase-1, CK1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits