YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114620540, gi...
Organism:	Pan troglodytes
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114620540, gi....

Description	E-value	Query Range	Subject Range
gi\|73999492 - gi\|73999492\|ref\|XP_544132.2\| PREDICTED: similar to protease inhibitor 15 preproprotein [Canis famili...	3.0E-70	[1..258]	[1..258]
gi\|109086722, gi... - gi\|109086724\|ref\|XP_001087254.1\| PREDICTED: similar to protease inhibitor 15 preproprotein isoform 2... CCDS6218.1_1 - null	4.0E-70	[1..258]	[1..258]
gi\|76682481 - gi\|76682481\|ref\|XP_612068.2\| PREDICTED: similar to protease inhibitor 15 preproprotein, partial [Bos...	8.0E-70	[1..258]	[62..319]
gi\|109475978, gi... - gi\|157817111\|ref\|NP_001100387.1\| peptidase inhibitor 15 [Rattus norvegicus], gi\|149060873\|gb\|EDM1148...	1.0E-69	[1..258]	[1..258]
PI15_CHICK - Peptidase inhibitor 15 OS=Gallus gallus GN=PI15 PE=2 SV=1	3.0E-68	[1..258]	[1..258]
gi\|109730909, gi... - gi\|26334089\|dbj\|BAC30762.1\| unnamed protein product [Mus musculus], gi\|225690632\|ref\|NP_444421.2\| pe...	2.0E-63	[1..258]	[12..269]
PI15_XENLA - Peptidase inhibitor 15 OS=Xenopus laevis GN=pi15 PE=2 SV=1	3.0E-61	[1..258]	[1..258]
PI15A_DANRE - Peptidase inhibitor 15-A OS=Danio rerio GN=pi15a PE=3 SV=2	5.0E-60	[10..258]	[10..260]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAISAVSSA LLFSLLCEAS TVVLLNSTDS SPPTNNFTDI EAALKAQLDS ADIPKARRKR  60
   61 YISQNDMIAI LDYHNQVRGK VFPPAANMEY MVWDENLAKS AEAWAATCIW DHGPSYLLRF 120
  121 LGQNLSVRTG RYRSILQLVK PWYDEVKDYA FPYPQDCNPR CPMRCFGPMC THYTQMVWAT 180
  181 SNRIGCAIHT CQNMNVWGSV WRRAVYLVCN YAPKGNWIGE APYKVGVPCS SCPPSYGGSC 240
  241 TDNLCFPGVT SNYLYWFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1u53A
Description:	Novel X-Ray Structure of Na-ASP-2, a PR-1 protein from the nematode parasite Necator americanus and a vaccine antigen for human hookworm infection
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits