YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123992824, gi...
Organism:	synthetic construct
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123992824, gi....

Description	E-value	Query Range	Subject Range
SPN1_MOUSE - Snurportin-1 OS=Mus musculus GN=Snupn PE=2 SV=1	0.0	[1..360]	[1..358]
SPN1_RAT - Snurportin-1 OS=Rattus norvegicus GN=Snupn PE=2 SV=1	0.0	[1..360]	[1..358]
SPN1_BOVIN - Snurportin-1 OS=Bos taurus GN=SNUPN PE=2 SV=1	0.0	[1..360]	[1..362]
gi\|74001015 - gi\|74001015\|ref\|XP_544780.2\| PREDICTED: similar to RNA, U transporter 1 [Canis familiaris]	0.0	[1..360]	[1..358]
gi\|41054409, gi\|... - gi\|41054409\|ref\|NP_955988.1\| snurportin 1 [Danio rerio], gi\|38541763\|gb\|AAH62858.1\| Snurportin 1 [Da...	0.0	[1..357]	[1..363]
gi\|77748238, gi\|... - gi\|77748238\|gb\|AAI06313.1\| MGC53674 protein [Xenopus laevis], gi\|27696171\|gb\|AAH43630.1\| MGC53674 pr...	0.0	[1..341]	[1..338]
SPN1_CHICK - Snurportin-1 OS=Gallus gallus GN=SNUPN PE=2 SV=1	0.0	[19..360]	[18..365]
CE09605 - status:Partially_confirmed UniProt:O17066 protein_id:AAB70323.1	0.0	[1..326]	[5..322]
gi\|187033698, gi... - gi\|39586897\|emb\|CAE62832.1\| Hypothetical protein CBG07011 [Caenorhabditis briggsae], gi\|187033698\|em... gi\|157754012 - gi\|157754012\|ref\|XP_001680718.1\| Hypothetical protein CBG07011 [Caenorhabditis briggsae AF16]	0.0	[1..325]	[5..325]
gi\|71041957 - gi\|71041957\|pdb\|1XK5\|A Chain A, Crystal Structure Of The M3g-Cap-Binding Domain Of Snurportin1 In Co...	0.0	[97..300]	[1..204]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELSQALAS SFSVSQDLNS TAAPHPRLSQ YKSKYSSLEQ SERRRRLLEL QKSKRLDYVN  60
   61 HARRLAEDDW TGMESEEENK KDDEEMDIDT V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1wa5B
Description:	Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [92-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKLPKHYANQ LMLSEWLIDV PSDLGQEWIV VVCPVGKRAL IVASRGSTSA YTKSGYCVNR  60
   61 FSSLLPGGNR RNSTAKDYTI LDCIYNEVNQ TYYVLDVMCW RGHPFYDCQT DFRFYWMHSK 120
  121 LPEEEGLGEK TKLNPFKFVG LKNFPCTPES LCDVLSMDFP FEVDGLLFYH KQTHYSPGST 180
  181 PLVGWLRPYM VSDVLGVAVP AGPLTTKPDY AGHQLQQIME HKKSQKEGMK EKLTHKASEN 240
  241 GHYELEHLST PKLKGSSHSP DHPGCLMEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1xk5A
Description:	Crystal structure of the m3G-cap-binding domain of snurportin1 in complex with a m3GpppG-cap dinucleotide
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits