YRC Public Data Repository - Protein Structure Prediction

Protein:	PLM_RAT
Organism:	Rattus norvegicus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLM_RAT.

Description	E-value	Query Range	Subject Range
gi\|73947952, gi\|... - gi\|73947952\|ref\|XP_867931.1\| PREDICTED: similar to phospholemman precursor isoform 4 [Canis familiar...	152.0	[0..1]	[92..1]
gi\|1916010 - gi\|1916010\|gb\|AAC51286.1\| phospholemman chloride channel [Homo sapiens]	152.0	[0..1]	[92..1]
PLM_BOVIN - Phospholemman OS=Bos taurus GN=FXYD1 PE=3 SV=1	150.0	[0..1]	[92..1]
gi\|114640716 - gi\|114640716\|ref\|XP_508784.2\| PREDICTED: hypothetical protein [Pan troglodytes]	132.0	[0..7]	[89..17]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPGHILIV CVCLLSMASA EAPQEPDPFT YDYHTLRIGG LTIAGILFIL GILIILSKRC  60
   61 RCKFNQQQRT GEPDEEEGTF RSSIRRLSTR RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits