YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123999266
Organism:	synthetic construct
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123999266.

Description	E-value	Query Range	Subject Range
LTR2B_XENLA - Ragulator complex protein LAMTOR2-B OS=Xenopus laevis GN=lamtor2-b PE=2 SV=1	215.0	[0..1]	[125..1]
gi\|62738001 - gi\|62738001\|pdb\|1SZV\|A Chain A, Structure Of The Adaptor Protein P14 Reveals A Profilin- Like Fold W...	213.0	[0..1]	[125..6]
LTOR2_DANRE - Ragulator complex protein LAMTOR2 OS=Danio rerio GN=lamtor2 PE=2 SV=1	208.0	[0..1]	[125..1]
LTOR2_XENTR - Ragulator complex protein LAMTOR2 OS=Xenopus tropicalis GN=lamtor2 PE=2 SV=1	207.0	[0..1]	[125..1]
gi\|47206663 - gi\|47206663\|emb\|CAF91658.1\| unnamed protein product [Tetraodon nigroviridis]	206.0	[0..1]	[125..1]
gi\|109481442, gi... - gi\|149029647\|gb\|EDL84818.1\| rCG63102 [Rattus norvegicus], gi\|109481442\|ref\|XP_001071319.1\| PREDICTED...	204.0	[0..1]	[125..1]
CG5189-PB, CG5189-PA - This gene is referred to in FlyBase by the symbol Dmel\CG5189 (CG5189, FBgn0034350). It is a protein...	202.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPKALTQV LSQANTGGVQ STLLLNNEGS LLAYSGYGDT DARVTAAIAS NIWAAYDRNG  60
   61 NQAFNEDNLK FILMDCMEGR VAITRVANLL LCMYAKETVG FGMLKAKAQA LVQYLEEPLT 120
  121 QVAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1szvA
Description:	Structure of the Adaptor Protein p14 reveals a Profilin-like Fold with Novel Function
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits