YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123981980, gi...
Organism:	synthetic construct
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123981980, gi....

Description	E-value	Query Range	Subject Range
gi\|114603533 - gi\|114603533\|ref\|XP_527130.2\| PREDICTED: hypothetical protein [Pan troglodytes]	1.0E-34	[1..106]	[1..106]
gi\|109079837 - gi\|109079837\|ref\|XP_001084675.1\| PREDICTED: similar to HIG1 domain family, member 2A [Macaca mulatta...	3.0E-34	[1..106]	[1..106]
gi\|61862118, gi\|... - gi\|61862118\|ref\|XP_582867.1\| PREDICTED: similar to CG9921-PA [Bos taurus], gi\|119895156\|ref\|XP_00125...	3.0E-33	[1..106]	[1..106]
HIGD2B - HIG1 hypoxia inducible domain family, member 2B (pseudogene)	8.0E-33	[1..106]	[1..106]
HIG2A_MOUSE - HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=3 SV=1	8.0E-33	[1..105]	[1..105]
gi\|183986567, gi... - ref\|XP_214433.1\| similar to RIKEN cDNA 2010110M21 [Rattus norvegicus], gi\|183986567\|gb\|AAI66544.1\| H...	4.0E-32	[1..105]	[1..105]
gi\|57085177 - gi\|57085177\|ref\|XP_536423.1\| PREDICTED: similar to CG9921-PA isoform 1 [Canis familiaris]	1.0E-30	[1..105]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPGPVIPE VPFEPSKPPV IEGLSPTVYR NPESFKEKFV RKTRENPVVP IGCLATAAAL  60
   61 TYGLYSFHRG NSQRSQLMMR TRIAAQGFTV AAILLGLAVT AMKSRP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.136677
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits