YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123998958, gi...
Organism:	synthetic construct
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123998958, gi....

Description	E-value	Query Range	Subject Range
gi\|60810097 - gi\|60810097\|gb\|AAX36104.1\| ornithine decarboxylase 1 [synthetic construct]	0.0	[1..461]	[1..461]
gi\|109101988, gi... - gi\|109101994\|ref\|XP_001086721.1\| PREDICTED: ornithine decarboxylase 1 isoform 5 [Macaca mulatta], gi...	0.0	[1..461]	[1..461]
gi\|114576083, gi... - gi\|114576083\|ref\|XP_001157701.1\| PREDICTED: ornithine decarboxylase 1 isoform 16 [Pan troglodytes], ...	0.0	[1..461]	[1..461]
gi\|73979741, gi\|... - gi\|73979741\|ref\|XP_856711.1\| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 9 [Canis fa...	0.0	[1..461]	[1..461]
DCOR_MOUSE - Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2	0.0	[1..461]	[1..461]
DCOR_RAT - Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1	0.0	[1..461]	[1..461]
DCOR_MUSPA - Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1	0.0	[1..461]	[1..461]

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Predicted Domain #1

Region A:
Residues: [1-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNFGNEEFD CHFLDEGFTA KDILDQKINE VSSSDDKDAF YVADLGDILK KHLRWLKALP  60
   61 RVTPFYAVKC NDSKAIVKTL AATGTGFDCA SKTEIQLVQS LGVPPERIIY ANPCKQVSQI 120
  121 KYAANNGVQM MTFDSEVELM KVARAHPKAK LVLRIATDDS KAVCRLSVKF GATLRTSRLL 180
  181 LERAKELNID VVGVSFHVGS GCTDPETFVQ AISDARCVFD MGAEVGFSMY LLDIGGGFPG 240
  241 SEDVKLKFEE ITGVINPALD KYFPSDSGVR IIAEPGRYYV ASAFTLAVNI IAKKIVLKEQ 300
  301 TGSDDEDESS EQTFMYYVND GVYGSFNCIL YDHAHVKPLL QKRPKPDEKY YSSSIWGPTC 360
  361 DGLDRIVERC DLPEMHVGDW MLFENMGAYT VAAASTFNGF QRPTIYYVMS GPAWQLMQQF 420
  421 QNPDFPPEVE EQDASTLPVS CAWESGMKRH RAACASASIN V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	156.0
Match:	2oo0A
Description:	No description for 2oo0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits