YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114615130
Organism:	Pan troglodytes
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114615130.

Description	E-value	Query Range	Subject Range
gi\|122891090, gi... - gi\|62899050\|ref\|NP_001017401.1\| zinc finger, HIT domain containing 1 [Danio rerio], gi\|62531213\|gb\|A...	5.0E-59	[1..154]	[1..154]
ZNHI1_MOUSE - Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1	2.0E-57	[1..154]	[1..154]
gi\|109066184 - gi\|109066184\|ref\|XP_001107895.1\| PREDICTED: zinc finger, HIT type 1 isoform 1 [Macaca mulatta]	1.0E-55	[8..154]	[22..168]
gi\|111305747, gi... - gi\|118403566\|ref\|NP_001017056.2\| zinc finger, HIT type 1 [Xenopus (Silurana) tropicalis], gi\|1113057...	6.0E-54	[1..154]	[1..153]
gi\|34871702, gi\|... - ref\|XP_341052.1\| similar to zinc finger, HIT domain containing 1; putative cyclin G1 interacting pro...	4.0E-52	[5..148]	[39..182]
gi\|39593136, gi\|... - gi\|39593136\|emb\|CAE64605.1\| Hypothetical protein CBG09361 [Caenorhabditis briggsae], gi\|187031911\|em... gi\|157763718 - gi\|157763718\|ref\|XP_001674202.1\| Hypothetical protein CBG09361 [Caenorhabditis briggsae AF16]	5.0E-45	[5..152]	[16..194]
CG31917-PA - This gene is referred to in FlyBase by the symbol Dmel\CG31917 (CG31917, FBgn0031668). It is a prote... gi\|220957658, gi... - gi\|220957658\|gb\|ACL91372.1\| CG31917-PA [synthetic construct], gi\|220948956\|gb\|ACL87021.1\| CG31917-PA...	7.0E-43	[5..153]	[4..150]

Back

Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEKKTSVRS QDPGQRRVLD RAARQRRINR QLEALENDNF QDDPHAGLPQ LGKRLPQFDD  60
   61 DADTGKKKKK TRGDHFKLRF RKNFQALLEE QNLSVAEGPN YLTACAGPPS RPQRPFCAVC 120
  121 GFPSPYTCVS CGARYCTVRC LGTHQETRCL KWTV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits