YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117645860
Organism:	synthetic construct
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117645860.

Description	E-value	Query Range	Subject Range
gi\|147900584, gi... - gi\|50416429\|gb\|AAH77293.1\| MGC80140 protein [Xenopus laevis], gi\|147900584\|ref\|NP_001086674.1\| MGC80...	9.0E-58	[1..244]	[1..243]
gi\|57098227 - gi\|57098227\|ref\|XP_532925.1\| PREDICTED: similar to Yip1 domain family, member 4 [Canis familiaris]	2.0E-57	[1..244]	[1..244]
CE40140 - Yeast YIP1 protein like status:Confirmed UniProt:O02335 protein_id:CAB03470.2	4.0E-57	[15..240]	[1..227]
YIPF4_CHICK - Protein YIPF4 OS=Gallus gallus GN=YIPF4 PE=2 SV=1	7.0E-57	[12..244]	[17..249]
gi\|187032392, gi... - gi\|39580726\|emb\|CAE64112.1\| Hypothetical protein CBG08721 [Caenorhabditis briggsae], gi\|187032392\|em... gi\|157748477 - gi\|157748477\|ref\|XP_001669333.1\| Hypothetical protein CBG08721 [Caenorhabditis briggsae AF16]	9.0E-57	[12..240]	[25..254]
ENSCJAT00000006317 - null gi\|109102591 - gi\|109102591\|ref\|XP_001106365.1\| PREDICTED: similar to Yip1 domain family, member 4 isoform 2 [Macac...	2.0E-56	[13..244]	[13..244]
gi\|94408016 - gi\|94408016\|ref\|XP_990916.1\| PREDICTED: similar to Yip1 domain family, member 6 [Mus musculus]	4.0E-56	[21..240]	[21..247]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPGPPPAY APTNGDFTFV SSADAEDLSG SIASPDVKLN LGGDFIKEST ATTFLRQRGY  60
   61 GWLLEVEDDD PEDNKPLLEE LDIDLKDIYY KIRCVLMPMP SLGFNRQVVR DNPDFWGPLA 120
  121 VVLFFSMISL YGQFRVVSWI ITIWIFGSLT IFLLARVLGG EVAYGQVLGV IGYSLLPLIV 180
  181 IAPVLLVVGS FEVVSTLIKL FGVFWAAYSA ASLLVGEEFK TKKPLLIYPI FLLYIYFLSL 240
  241 YTGV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.327902
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits