YRC Public Data Repository - Protein Structure Prediction

Protein:	GLGS_SALCH
Organism:	Salmonella choleraesuis
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLGS_SALCH.

Description	E-value	Query Range	Subject Range
gi\|49258784 - gi\|49258784\|pdb\|1RRZ\|A Chain A, Solution Structure Of Glgs Protein From E. Coli	122.0	[0..3]	[67..22]
EG11381 - motility and biofilm regulator / Motility and biofilm regulator GLGS_ECOLI - Glycogen synthesis protein glgS - Escherichia coli gi\|188494000, gi... - gi\|188494000\|ref\|ZP_03001270.1\| glycogen biosynthesis, rpoS dependent [Escherichia coli 53638], gi\|1... GLGS_ECODH - Surface composition regulator OS=Escherichia coli (strain K12 / DH10B) GN=glgS PE=3 SV=1 gi\|194426410, gi... - gi\|194426410\|ref\|ZP_03058965.1\| glycogen synthesis protein GlgS [Escherichia coli B171], gi\|19441571... gi\|192959453, gi... - gi\|193067496\|ref\|ZP_03048464.1\| glycogen synthesis protein GlgS [Escherichia coli E110019], gi\|19295... gi\|124526040, gi... - gi\|124526040\|ref\|ZP_01698045.1\| glycogen biosynthesis, RpoS dependent [Escherichia coli B], gi\|12450... gi\|193062129, gi... - gi\|193062129\|ref\|ZP_03043225.1\| glycogen synthesis protein GlgS [Escherichia coli E22], gi\|192932349... gi\|190901136, gi... - gi\|191168807\|ref\|ZP_03030582.1\| glycogen synthesis protein GlgS [Escherichia coli B7A], gi\|190901136... GLGS_SHISS - Surface composition regulator OS=Shigella sonnei (strain Ss046) GN=glgS PE=3 SV=1 GLGS_ECO8A - Surface composition regulator OS=Escherichia coli O8 (strain IAI1) GN=glgS PE=3 SV=1 GLGS_ECOSE - Surface composition regulator OS=Escherichia coli (strain SE11) GN=glgS PE=3 SV=1 GLGS_ECOHS - Surface composition regulator OS=Escherichia coli O9:H4 (strain HS) GN=glgS PE=3 SV=1 gi\|194424161, gi... - gi\|194436679\|ref\|ZP_03068779.1\| glycogen synthesis protein GlgS [Escherichia coli 101-1], gi\|1944241... GLGS_ECO24 - Surface composition regulator OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgS PE=3 SV=1 gi\|194419990, gi... - gi\|194431634\|ref\|ZP_03063925.1\| glycogen synthesis protein GlgS [Shigella dysenteriae 1012], gi\|1944... GLGS_ECO7I - Surface composition regulator OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glgS PE=3 SV=1 GLGS_ECO55 - Surface composition regulator OS=Escherichia coli (strain 55989 / EAEC) GN=glgS PE=3 SV=1 EG11381 - motility and biofilm regulator / Motility and biofilm regulator GLGS_ECOBW - Surface composition regulator OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=glgS PE=3 SV=1 gi\|89109819, gi\|... - gi\|89109819\|ref\|AP_003599.1\| predicted glycogen synthesis protein [Escherichia coli str. K-12 substr... gi\|253979053, gi... - gi\|254289746\|ref\|YP_003055494.1\| glycogen synthesis protein GlgS [Escherichia coli BL21(DE3)], gi\|25... GLGS_ECOLC - Surface composition regulator OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glgS PE=... gi\|242378599, gi... - gi\|251786326\|ref\|YP_003000630.1\| hypothetical protein B21_02869 [Escherichia coli BL21], gi\|24237859... gi\|253974897, gi... - gi\|254162996\|ref\|YP_003046104.1\| glycogen synthesis protein GlgS [Escherichia coli B str. REL606], g...	117.0	[0..3]	[67..2]
gi\|91074051, gi\|... - gi\|91212477\|ref\|YP_542463.1\| glycogen synthesis protein GlgS [Escherichia coli UTI89], gi\|91074051\|g... gi\|26110056, gi\|... - gi\|26249628\|ref\|NP_755668.1\| glycogen synthesis protein GlgS [Escherichia coli CFT073], gi\|26110056\|... gi\|209759408, gi... - gi\|25497232\|pir\|\|C85965 glycogen biosynthesis, rpoS dependent [imported] - Escherichia coli (strain ... gi\|15803591, gi\|... - gi\|15803591\|ref\|NP_289624.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 EDL933], gi\|1... gi\|237706191, gi... - gi\|237706191\|ref\|ZP_04536672.1\| glycogen synthesis protein glgS [Escherichia sp. 3_2_53FAA], gi\|2268...	117.0	[0..3]	[67..4]
gi\|189363679, gi... - gi\|189363679\|gb\|EDU82098.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4486], ... gi\|189369211, gi... - gi\|189369211\|gb\|EDU87627.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4501], ... gi\|189358533, gi... - gi\|189358533\|gb\|EDU76952.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4401], ... gi\|25391441 - pir\|\|C91120 glycogen biosynthesis protein GlgS [imported] - Escherichia coli (strain O157:H7, substr... gi\|188017850, gi... - gi\|188017850\|gb\|EDU55972.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4113], ... GLGS_ECOL6 - Glycogen synthesis protein glgS OS=Escherichia coli O6 GN=glgS PE=3 SV=1 GLGS_ECO57 - Surface composition regulator OS=Escherichia coli O157:H7 GN=glgS PE=3 SV=1 sp\|B7UIV7\|GLGS_ECO27 - Glycogen synthesis protein glgS OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glgS PE=3 SV... GLGS_ECO27 - Surface composition regulator OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glgS PE=3 SV=1 GLGS_ECO5E - Surface composition regulator OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgS PE=3 SV=1 gi\|208741838, gi... - gi\|208821715\|ref\|ZP_03262035.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC404... gi\|208812041, gi... - gi\|208812041\|ref\|ZP_03253370.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC404... GLGS_ECOLU - Surface composition regulator OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgS PE=3 S... GLGS_ECO81 - Surface composition regulator OS=Escherichia coli O81 (strain ED1a) GN=glgS PE=3 SV=1 GLGS_ECO45 - Surface composition regulator OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glgS PE=3 SV=1 gi\|217327705, gi... - gi\|217327705\|ref\|ZP_03443788.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. TW145... gi\|168797637, gi... - gi\|189379787\|gb\|EDU98203.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC508], g... gi\|168785919, gi... - gi\|189374062\|gb\|EDU92478.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC869], g... gi\|189000640, gi... - gi\|189000640\|gb\|EDU69626.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4076], ... gi\|187770974, gi... - gi\|187770974\|gb\|EDU34818.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC4196], ... gi\|208806637, gi... - gi\|208806637\|ref\|ZP_03248974.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC420... gi\|195937191 - gi\|195937191\|ref\|ZP_03082573.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. EC402... gi\|190907146, gi... - gi\|191172478\|ref\|ZP_03034018.1\| glycogen synthesis protein GlgS [Escherichia coli F11], gi\|190907146... GLGS_ECOSM - Surface composition regulator OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgS PE=3 SV=1 gi\|15833185, gi\|... - gi\|15833185\|ref\|NP_311958.1\| glycogen synthesis protein GlgS [Escherichia coli O157:H7 str. Sakai], ... GLGS_ECOL5 - Surface composition regulator OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glgS PE=3 SV=1 gi\|227887769, gi... - gi\|227887769\|ref\|ZP_04005574.1\| glycogen synthesis protein GlgS [Escherichia coli 83972], gi\|2278351... gi\|254795000, gi... - gi\|254795000\|ref\|YP_003079837.1\| predicted glycogen synthesis protein [Escherichia coli O157:H7 str.... GLGS_ECOUT - Surface composition regulator OS=Escherichia coli (strain UTI89 / UPEC) GN=glgS PE=3 SV=2 GLGS_ECOL6 - Surface composition regulator OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=glgS...	116.0	[0..3]	[67..2]
GLGS_SHIFL - Surface composition regulator OS=Shigella flexneri GN=glgS PE=3 SV=1 gi\|56480247, gi\|... - gi\|56480247\|ref\|NP_708859.2\| glycogen synthesis protein GlgS [Shigella flexneri 2a str. 301], gi\|563... gi\|30064398, gi\|... - gi\|30064398\|ref\|NP_838569.1\| glycogen synthesis protein GlgS [Shigella flexneri 2a str. 2457T], gi\|3...	115.0	[0..3]	[67..2]
GLGS_SHIDS - Surface composition regulator OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgS PE=3 SV=1	115.0	[0..3]	[67..2]
GLGS_SALTI - Glycogen synthesis protein glgS OS=Salmonella typhi GN=glgS PE=3 SV=1 GLGS_SALPA - Glycogen synthesis protein glgS OS=Salmonella paratyphi A GN=glgS PE=3 SV=1 GLGS_SALPK - Surface composition regulator OS=Salmonella paratyphi A (strain AKU_12601) GN=glgS PE=3 SV=1 GLGS_SALTI - Surface composition regulator OS=Salmonella typhi GN=glgS PE=3 SV=1 GLGS_SALPA - Surface composition regulator OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glgS PE=3 SV=... gi\|29143458, gi\|... - gi\|29143458\|ref\|NP_806800.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enterica se... gi\|16761971 - gi\|16761971\|ref\|NP_457588.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enterica se...	105.0	[0..12]	[67..12]
gi\|161616188, gi... - gi\|161616188\|ref\|YP_001590153.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enteric... gi\|16421754, gi\|... - gi\|16766497\|ref\|NP_462112.1\| glycogen synthesis protein GlgS [Salmonella typhimurium LT2], gi\|164217... lcl\|NC_016856.1_... - [gene=glgS] [protein=glycogen synthesis protein GlgS] [protein_id=YP_005239370.1] [location=compleme... gi\|224469528, gi... - gi\|224585000\|ref\|YP_002638799.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enteric... gi\|204928029, gi... - gi\|204928029\|ref\|ZP_03219229.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|238909999 - gi\|238909999\|ref\|ZP_04653836.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enterica... gi\|205354112, gi... - gi\|205354112\|ref\|YP_002227913.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enteric... gi\|197939367, gi... - gi\|198244851\|ref\|YP_002217177.1\| hypothetical protein SeD_A3551 [Salmonella enterica subsp. enterica... gi\|200386663, gi... - gi\|200386663\|ref\|ZP_03213275.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197250725, gi... - gi\|197250725\|ref\|YP_002148126.1\| hypothetical protein SeAg_B3381 [Salmonella enterica subsp. enteric... gi\|197241816, gi... - gi\|197263561\|ref\|ZP_03163635.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194458932, gi... - gi\|194472568\|ref\|ZP_03078552.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194711345, gi... - gi\|194735843\|ref\|YP_002116154.1\| hypothetical protein SeSA_A3386 [Salmonella enterica subsp. enteric... gi\|194401687, gi... - gi\|194443024\|ref\|YP_002042464.1\| hypothetical protein SNSL254_A3456 [Salmonella enterica subsp. ente... gi\|194450488, gi... - gi\|194450488\|ref\|YP_002047194.1\| glycogen synthesis protein GlgS [Salmonella enterica subsp. enteric... gi\|195633761, gi... - gi\|195633761\|gb\|EDX52175.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|168819739, gi... - gi\|205343362\|gb\|EDZ30126.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|205337827, gi... - gi\|205337827\|gb\|EDZ24591.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|168262843, gi... - gi\|205348371\|gb\|EDZ35002.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205333811, gi... - gi\|205333811\|gb\|EDZ20575.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|197289046, gi... - gi\|197289046\|gb\|EDY28417.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|167551888, gi... - gi\|205323337\|gb\|EDZ11176.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|167990251, gi... - gi\|205331056\|gb\|EDZ17820.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,...	104.0	[0..12]	[67..14]

Back

Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNNVYSLN NFDFLARSFA RMQAEGRPVD IQAVTGNMDE EHRDWFCKRY ALYCQQATQA  60
   61 KRLELEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1rrzA
Description:	Solution structure of GlgS protein from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits