YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117646504, gi...
Organism:	synthetic construct
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117646504, gi....

Description	E-value	Query Range	Subject Range
gi\|55650568 - gi\|55650568\|ref\|XP_525238.1\| PREDICTED: similar to SRXN1 protein [Pan troglodytes]	234.0	[0..1]	[137..1]
gi\|15030144 - gi\|15030144\|gb\|AAH11325.1\| Sulfiredoxin 1 homolog (S. cerevisiae) [Mus musculus]	233.0	[0..1]	[137..1]
gi\|16877494 - gi\|16877494\|gb\|AAH17001.1\| SRXN1 protein [Homo sapiens]	222.0	[0..8]	[137..1]
gi\|114145491, gi... - gi\|62646057\|ref\|XP_215887.2\| PREDICTED: similar to Ab2-390 [Rattus norvegicus], gi\|33086588\|gb\|AAP92...	216.0	[0..1]	[117..1]
gi\|109092543 - gi\|109092543\|ref\|XP_001112394.1\| PREDICTED: similar to sulfiredoxin 1 homolog [Macaca mulatta]	213.0	[0..16]	[137..16]
gi\|76672594 - gi\|76672594\|ref\|XP_610105.2\| PREDICTED: similar to sulfiredoxin 1 homolog, partial [Bos taurus]	211.0	[0..8]	[137..53]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRAGGTLG RAGAGRGAPE GPGPSGGAQG GSIHSGRIAA VHNVPLSVLI RPLPSVLDPA  60
   61 KVQSLVDTIR EDPDSVPPID VLWIKGAQGG DYFYSFGGCH RYAAYQQLQR ETIPAKLVQS 120
  121 TLSDLRVYLG ASTPDLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1yzsA
Description:	Solution structure of human sulfiredoxin (srx)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits