YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123982630, gi...
Organism:	synthetic construct
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982630, gi....

Description	E-value	Query Range	Subject Range
gi\|33150728 - gi\|33150728\|gb\|AAP97242.1\|AF123763_1 PKC-potentiated inhibitory protein of PP1 [Homo sapiens]	7.0E-52	[1..147]	[1..147]
PP14A_MOUSE - Protein phosphatase 1 regulatory subunit 14A OS=Mus musculus GN=Ppp1r14a PE=1 SV=1	1.0E-50	[1..147]	[1..147]
PP14A_PIG - Protein phosphatase 1 regulatory subunit 14A OS=Sus scrofa GN=CPI17 PE=1 SV=1	1.0E-50	[1..147]	[1..147]
gi\|76641562 - gi\|76641562\|ref\|XP_872227.1\| PREDICTED: similar to 17-kDa PKC-potentiated inhibitory protein of PP1 ...	2.0E-50	[1..147]	[1..147]
PP14A_RAT - Protein phosphatase 1 regulatory subunit 14A OS=Rattus norvegicus GN=Ppp1r14a PE=1 SV=1	1.0E-48	[1..147]	[1..147]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	3.0E-46	[12..132]	[569..686]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQRLGKRV LSKLQSPSRA RGPGGSPGGL QKRHARVTVK YDRRELQRRL DVEKWIDGRL  60
   61 EELYRGMEAD MPDEINIDEL LELESEEERS RKIQGLLKSC GKPVEDFIQE LLAKLQGLHR 120
  121 QPGLRQPSPS HDGSLSPLQD RARTAHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits