YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126166795, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126166795, gi....

Description	E-value	Query Range	Subject Range
gi\|82737938, gi\|... - gi\|82737938\|ref\|ZP_00900780.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714943\|g...	0.0	[2..274]	[45..317]
gi\|49083452 - gi\|49083452\|gb\|AAT51036.1\| PA1769 [synthetic construct]	0.0	[1..274]	[1..274]
YM91_PSESM, Y229... - (Q883Q9) Hypothetical UPF0085 protein PSPTO2291, Putative phosphotransferase PSPTO_2291 OS=Pseudomon... PSRP_PSESM - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas syringae pv. tomato (strain ... gi\|213927074, gi... - gi\|213968094\|ref\|ZP_03396239.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],...	0.0	[3..274]	[1..272]
PSRP_PSE14 - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas savastanoi pv. phaseolicola ...	0.0	[3..274]	[1..272]
gi\|150963466, gi... - gi\|94414598\|ref\|ZP_01294457.1\| hypothetical protein PaerP_01003673 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[3..274]	[1..272]
gi\|53727868 - gi\|53727868\|ref\|ZP_00139427.2\| COG1806: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|107101200 - gi\|107101200\|ref\|ZP_01365118.1\| hypothetical protein PaerPA_01002232 [Pseudomonas aeruginosa PACS2] gi\|84321501 - gi\|84321501\|ref\|ZP_00969858.1\| COG1806: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|84328090 - gi\|84328090\|ref\|ZP_00976101.1\| COG1806: Uncharacterized protein conserved in bacteria [Pseudomonas a...	0.0	[3..274]	[1..272]
PSRP_PSEF5 - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas fluorescens (strain Pf-5 / A...	0.0	[3..274]	[1..272]
PSRP_PSEPF - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas fluorescens (strain Pf0-1) G...	0.0	[3..274]	[1..272]
PSRP_PSEPK - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas putida (strain KT2440) GN=PP...	0.0	[3..274]	[1..272]
gi\|237803651 - gi\|237803651\|ref\|ZP_04591236.1\| hypothetical protein Psyrpo1_28502 [Pseudomonas syringae pv. oryzae ... PSRP_PSEU2 - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas syringae pv. syringae (strai... tr\|F3GEK8\|F3GEK8... - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas syringae pv. pisi str. 1704B...	0.0	[3..274]	[1..272]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMKRTAFFI SDGTGITAET LGQSLLAQFE NISFVKLTRP YIDTEEKARA MVQQINNAAE  60
   61 SDGARPIIFD TIVNRDIRAV LAQSNGFMID IFATFLSPLE QELSADSSYS VGKSHSIGHN 120
  121 SNYMDRIEAV NFALD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.721246
Match:	PF03618.5
Description:	No description for PF03618.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.891	0.000	ATP binding	c.54.1	IIA domain of mannose transporter, IIA-Man

Predicted Domain #2

Region A:
Residues: [136-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDDGARTHYY DKADLILVGV SRCGKTPTCL YMALQYGIRA ANYPLTEEDM ERLQLPNALK  60
   61 QYKHKLFGLT IDPDRLTAIR NERKPNSRYA SFAQCEFEVR EVESLFRREN IAYINSTHFS 120
  121 VEEISAKILV EKGVERRFK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.301700930786307	bayes_pls_golite062009
catalytic activity	0.176212702885001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: