YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114631347
Organism:	Pan troglodytes
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114631347.

Description	E-value	Query Range	Subject Range
VDAC2_RABIT - Voltage-dependent anion-selective channel protein 2 OS=Oryctolagus cuniculus GN=VDAC2 PE=2 SV=1 POR2_BOVIN - (P68002) Voltage-dependent anion-selective channel protein 2 (Outer mitochondrial membrane protein p...	0.0	[1..294]	[1..294]
VDAC2_PIG - Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1	0.0	[1..294]	[1..294]
gi\|346412, gi\|340201 - gi\|346412\|pir\|\|B44422 voltage-dependent anion channel VDAC2 - human, gi\|340201\|gb\|AAB59457.1\| voltag...	0.0	[1..294]	[1..294]
gi\|114603148 - gi\|114603148\|ref\|XP_001139116.1\| PREDICTED: similar to voltage-dependent anion channel [Pan troglody...	0.0	[1..294]	[1..294]
gi\|8574295 - gi\|8574295\|emb\|CAB94711.2\| voltage-dependent anion channel 2 [Bos taurus]	0.0	[1..294]	[1..294]
gi\|73953097, gi\|... - gi\|73953097\|ref\|XP_536398.2\| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1 [Cani...	0.0	[1..294]	[1..294]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	0.0	[8..294]	[9..295]

Back

Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHGQTCAR PMCIPPSYAD LGKAARDIFN KGFGFGLVKL DVKTKSCSGV EFSTSGSSNT  60
   61 DTGKVTGTLE TKYKWCEYGL TFTEKWNTDN TLGTEIAIED QICQGLKLTF DTTFSPNTGK 120
  121 KSGKIKSSYK RECINLGCDV DFDFAGPAIH GSAVFGYEGW LAGYQMTFDS AK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.102373
Match:	PF01459.13
Description:	No description for PF01459.13 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [173-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLTRNNFAV GYRTGDFQLH TNVNDGTEFG GSIYQKVCED LDTSVNLAWT SGTNCTRFGI  60
   61 AAKYQLDPTA SISAKVNNSS LIGVGYTQTL RPGVKLTLSA LVDGKSINAG GHKVGLALEL 120
  121 EA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.998
Match:	2ervA
Description:	No description for 2ervA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits