YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109506448, gi...
Organism:	Rattus norvegicus
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109506448, gi....

Description	E-value	Query Range	Subject Range
gi\|116192375, gi... - gi\|88181818\|gb\|EAQ89286.1\| hypothetical protein CHGG_05905 [Chaetomium globosum CBS 148.51], gi\|1161...	145.0	[0..3]	[117..324]
gi\|49092698, gi\|... - gi\|67526431\|ref\|XP_661277.1\| hypothetical protein AN3673.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	136.0	[0..3]	[121..2]
gi\|16945386, gi\|... - gi\|32419429\|ref\|XP_330158.1\| hypothetical protein ( (AL389891) related to prefoldin subunit 1 [Neuro... gi\|85117998 - gi\|85117998\|ref\|XP_965357.1\| hypothetical protein NCU02970 [Neurospora crassa OR74A]	131.0	[0..3]	[119..2]
gi\|38108882, gi\|... - gi\|39941420\|ref\|XP_360247.1\| hypothetical protein MG05621.4 [Magnaporthe grisea 70-15], gb\|EAA54830....	125.0	[0..3]	[121..2]
PFD1_PONPY - Prefoldin subunit 1 - Pongo pygmaeus (Orangutan) gi\|55624946 - gi\|55624946\|ref\|XP_517971.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] ENSCJAT00000032698 - null gi\|109078947 - gi\|109078947\|ref\|XP_001086335.1\| PREDICTED: similar to prefoldin subunit 1 [Macaca mulatta] PFD1_PONAB - Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1	125.0	[0..1]	[122..1]
PFD1_BOVIN - Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1	124.0	[0..1]	[122..1]
gi\|73949252, gi\|... - gi\|73956303\|ref\|XP_547780.2\| PREDICTED: similar to prefoldin 1 [Canis familiaris], gi\|73949252\|ref\|X...	124.0	[0..1]	[122..1]
PFD1_MOUSE - Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=1 SV=1	124.0	[0..1]	[122..1]
gi\|60654281 - gi\|60654281\|gb\|AAX29833.1\| prefoldin 1 [synthetic construct]	124.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVDLELK KAFTELQAKV IDTQQKVKLA DIQIEQLNRT KKHAHLTDTE IMTLVDETNM  60
   61 YEGVGRMFIL QSKEVIHNQL LEKQKIAEEK IKELEQKKSY LERSVKEAED NIREMLMARR 120
  121 AQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.27
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits