YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114620343
Organism:	Pan troglodytes
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114620343.

Description	E-value	Query Range	Subject Range
gi\|90077166 - gi\|90077166\|dbj\|BAE88263.1\| unnamed protein product [Macaca fascicularis] gi\|109086578 - gi\|109086578\|ref\|XP_001094433.1\| PREDICTED: similar to Corticoliberin precursor (Corticotropin-relea...	2.0E-60	[1..196]	[1..196]
CRF_CANLF - Corticoliberin OS=Canis lupus familiaris GN=CRH PE=2 SV=2	2.0E-59	[1..196]	[1..196]
CRF_PIG - Corticoliberin precursor - Sus scrofa (Pig)	5.0E-57	[1..196]	[1..191]
CRF_RAT - Corticoliberin OS=Rattus norvegicus GN=Crh PE=1 SV=1	4.0E-53	[1..196]	[1..187]
gi\|185134351, gi... - gi\|34391389\|gb\|AAL09823.1\| corticotropin-releasing factor precursor [Oncorhynchus mykiss], gi\|333399...	4.0E-52	[1..196]	[1..167]
gi\|95115714, gi\|... - gi\|95115714\|gb\|ABF56160.1\| corticotropin releasing hormone [Felis catus], gi\|100818601\|ref\|NP_001035...	5.0E-52	[1..196]	[1..198]
CRF_MOUSE - Corticoliberin OS=Mus musculus GN=Crh PE=2 SV=1	2.0E-51	[1..196]	[1..187]
gi\|18073938 - gi\|18073938\|emb\|CAC84859.1\| putative corticotropin releasing hormone [Cyprinus carpio]	4.0E-51	[1..196]	[1..162]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPLLVSAG VLLVALLPCP PCRALLSRGP VPGARQAPQH PQPLDFFQPP PQSEQPQQPQ  60
   61 ARPVLLRMGE EYFLRLGNLN KSPAAPLSPA SSLLAGGSGS RPSPEQATAN FFRVLLQQLL 120
  121 LPRRSLDSPA ALAERGARNA LGGHQEAPER ERRSEEPPIS LDLTFHLLRE VLEMARAEQL 180
  181 AQQAHSNRKL MEIIGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits