YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123997937, gi...
Organism:	synthetic construct
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123997937, gi....

Description	E-value	Query Range	Subject Range
gi\|55624036 - gi\|55624036\|ref\|XP_517669.1\| PREDICTED: hypothetical protein [Pan troglodytes]	7.0E-84	[1..219]	[1..219]
gi\|109077825 - gi\|109077825\|ref\|XP_001111368.1\| PREDICTED: similar to APG10 autophagy 10-like [Macaca mulatta]	1.0E-80	[1..216]	[1..216]
ATG10_MOUSE - Ubiquitin-like-conjugating enzyme ATG10 OS=Mus musculus GN=Atg10 PE=1 SV=1	2.0E-79	[3..216]	[2..215]
gi\|157824002, gi... - gi\|157824002\|ref\|NP_001102975.1\| autophagy-related 10 [Rattus norvegicus], gi\|149058992\|gb\|EDM09999....	1.0E-75	[3..216]	[2..214]
gi\|73952324 - gi\|73952324\|ref\|XP_852603.1\| PREDICTED: similar to APG10 autophagy 10-like [Canis familiaris]	4.0E-74	[1..219]	[1..219]
gi\|116310698, gi... - gi\|218195132\|gb\|EEC77559.1\| hypothetical protein OsI_16487 [Oryza sativa Indica Group], gi\|116310716... gi\|38345387, gi\|... - gi\|50925983\|ref\|XP_473039.1\| OSJNBa0067K08.16 [Oryza sativa (japonica cultivar-group)], gi\|38345387\|...	1.0E-59	[4..208]	[9..214]
gi\|50761977 - gi\|50761977\|ref\|XP_424902.1\| PREDICTED: similar to APG10 autophagy 10-like [Gallus gallus]	3.0E-58	[1..218]	[3..219]
gi\|30680336 - gi\|30680336\|ref\|NP_850533.1\| ATG10 (autophagy 10); transporter/ ubiquitin activating enzyme [Arabido...	7.0E-55	[3..207]	[8..223]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDEFIGEK TFQRYCAEFI KHSQQIGDSW EWRPSKDCSD GYMCKIHFQI KNGSVMSHLG  60
   61 ASTHGQTCLP MEEAFELPLD DCEVIETAAA SEVIKYEYHV LYSCSYQVPV LYFRASFLDG 120
  121 RPLTLKDIWE GVHECYKMRL LQGPWDTITQ QEHPILGQPF FVLHPCKTNE FMTPVLKNSQ 180
  181 KINKNVNYIT SWLSIVGPVV GLNLPLSYAK ATSQDERNVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2dytA
Description:	No description for 2dytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits