YRC Public Data Repository - Protein Structure Prediction

Protein:	SC22B_RAT
Organism:	Rattus norvegicus
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC22B_RAT.

Description	E-value	Query Range	Subject Range
gi\|194036349 - gi\|194036349\|ref\|XP_001928721.1\| PREDICTED: similar to vesicle trafficking protein sec22b [Sus scrof... tr\|M3X0S7\|M3X0S7... - SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) OS=Felis catus GN=SEC22B PE=3 SV=1 gi\|126313582 - gi\|126313582\|ref\|XP_001363127.1\| PREDICTED: similar to vesicle trafficking protein sec22b [Monodelph... gi\|57098751 - gi\|57098751\|ref\|XP_533025.1\| PREDICTED: similar to SEC22 vesicle trafficking protein-like 1 [Canis f... gi\|76612898, gi\|... - gi\|76612900\|ref\|XP_885556.1\| PREDICTED: similar to SEC22 vesicle trafficking protein-like 1 isoform ...	227.0	[0..1]	[215..1]
gi\|14290512 - gi\|14290512\|gb\|AAH09024.1\| SEC22 vesicle trafficking protein homolog B (S. cerevisiae) [Mus musculus...	226.0	[0..1]	[215..1]
gi\|29351641 - gi\|29351641\|gb\|AAH49291.1\| Sec22l1b protein [Xenopus laevis]	225.0	[0..1]	[215..6]
SC22B_CRIGR - Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3	224.0	[0..1]	[215..1]
SC22B_CHICK - Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1	224.0	[0..1]	[215..1]
gi\|94429050 - gi\|94429050\|ref\|NP_004883.2\| SEC22 vesicle trafficking protein homolog B [Homo sapiens]	224.0	[0..1]	[215..1]
S22BB_DANRE - Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1	223.0	[0..1]	[215..1]
gi\|115496488, gi... - gi\|74354583\|gb\|AAI02343.1\| SEC22 vesicle trafficking protein homolog B (S. cerevisiae) [Bos taurus],...	222.0	[0..1]	[208..1]
SC22B_XENTR - Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1	222.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLTMIARV ADGLPLAASM QEDEQSGRDL QQYQSQAKQL FRKLNEQSPT RCTLEAGAMT  60
   61 FHYIIEQGVC YLVLCEAAFP KKLAFAYLED LHSEFDEQHG KKVPTVSRPY SFIEFDTFIQ 120
  121 KTKKLYIDSR ARRNLGSINT ELQDVQRIMV ANIEEVLQRG EALSALDSKA NNLSSLSKKY 180
  181 RQDAKYLNMR STYAKLAAVA VFFIMLIVYV RFWWL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	2nupC
Description:	No description for 2nupC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits