YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123981662, gi...
Organism:	synthetic construct
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123981662, gi....

Description	E-value	Query Range	Subject Range
gi\|109002421 - gi\|109002421\|ref\|XP_001113124.1\| PREDICTED: similar to Ras-related GTP binding C [Macaca mulatta]	0.0	[1..399]	[1..399]
gi\|12007486 - gi\|12007486\|gb\|AAG45221.1\|AF323609_1 GTPase-interacting protein 2; putative small GTPase [Homo sapie...	1.0E-99	[1..399]	[1..399]
gi\|115497870, gi... - gi\|115497870\|ref\|NP_001069924.1\| Ras-related GTP binding C [Bos taurus], gi\|111304525\|gb\|AAI19865.1\|...	8.0E-99	[1..399]	[1..399]
gi\|4519623, gi\|8... - gi\|8567356\|ref\|NP_059503.1\| small GTPase homolog [Mus musculus], gi\|4519623\|dbj\|BAA75671.1\| unnamed ...	1.0E-98	[1..399]	[1..398]
gi\|114205488, gi... - gi\|34870980\|ref\|XP_216515.2\| PREDICTED: similar to Ras-related GTP binding C [Rattus norvegicus], gi...	9.0E-98	[1..399]	[1..398]
gi\|114555754 - gi\|114555754\|ref\|XP_513334.2\| PREDICTED: Ras-related GTP binding C [Pan troglodytes]	2.0E-94	[26..399]	[81..457]
gi\|50744702 - gi\|50744702\|ref\|XP_419838.1\| PREDICTED: similar to Ras-related GTP binding D; Rag D protein [Gallus ...	6.0E-92	[59..396]	[689..1026]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQYGAEET PLAGSYGAAD SFPKDFGYGV EEEEEEAAAA GGGVGAGAGG GCGPGGADSS  60
   61 KPRILLMGLR RSGKSSIQKV VFHKMSPNET LFLESTNKIY KDDISNSSFV NFQIWDFPGQ 120
  121 MDFFDPTFDY EMIFRGTGAL IYVIDAQDDY MEALTRLHIT VSKAYKVNPD MNFEVFIHKV 180
  181 DGLSDDHKIE TQRDIHQRAN DDLADAGLEK LHLSFYLTSI YDHSIFEAFS KVVQKLIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2q3fA
Description:	No description for 2q3fA was found.

Predicted Domain #2

Region A:
Residues: [239-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLPTLENLLN IFISNSGIEK AFLFDVVSKI YIATDSSPVD MQSYELCCDM IDVVIDVSCI  60
   61 YGLKEDGSGS AYDKESMAII KLNNTTVLYL KEVTKFLALV CILREESFER KGLIDYNFHC 120
  121 FRKAIHEVFE VGVTSHRSCG HQTSASSLKA LTHNGTPRNA I

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1j3wA
Description:	Structure of Gliding protein-mglB from Thermus Thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.13212621815934	bayes_pls_golite062009
protein binding	1.94302464224816	bayes_pls_golite062009
hydrolase activity	1.72993954630083	bayes_pls_golite062009
signal transducer activity	1.01677638017819	bayes_pls_golite062009
molecular transducer activity	1.01677638017819	bayes_pls_golite062009
catalytic activity	0.414880787313138	bayes_pls_golite062009
motor activity	0.225472578215741	bayes_pls_golite062009
microtubule motor activity	0.19010053360226	bayes_pls_golite062009
enzyme regulator activity	0.174168038925606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: