YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119888612, gi...
Organism:	Bos taurus
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119888612, gi....

Description	E-value	Query Range	Subject Range
gi\|1246236 - gi\|1246236\|gb\|AAB39331.1\| ptp-IV1b, PTP-IV1 [Homo sapiens]	2.0E-42	[1..167]	[1..167]
gi\|147902862, gi... - gi\|48290362\|dbj\|BAD22566.1\| xPRL-2 [Xenopus laevis], gi\|27882429\|gb\|AAH44707.1\| Ptp4a2 protein [Xeno...	5.0E-42	[1..167]	[1..167]
gi\|3242307, gi\|1... - gi\|3242307\|emb\|CAA07417.1\| protein tyrosine phosphatase [Rattus norvegicus], gi\|17865337\|ref\|NP_4459...	6.0E-42	[1..167]	[1..167]
gi\|89269539, gi\|... - gi\|89269539\|emb\|CAJ83268.1\| protein tyrosine phosphatase type IVA, member 2 [Xenopus tropicalis], gi...	8.0E-42	[1..167]	[1..167]
gi\|542150125\|ref... - PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X2 [Zonotrichia albicollis], PREDICTED: p... gi\|224048583 - gi\|224048583\|ref\|XP_002193977.1\| PREDICTED: protein tyrosine phosphatase type IVA, member 1 [Taeniop... gi\|56605916, gi\|... - gi\|56605916\|ref\|NP_001008461.1\| protein tyrosine phosphatase type IVA, member 1 [Gallus gallus], gi\|...	1.0E-41	[1..167]	[4..173]
gi\|73950021, gi\|... - gi\|73950023\|ref\|XP_864976.1\| PREDICTED: similar to Protein tyrosine phosphatase type IVA protein 2 (... tr\|M3WN26\|M3WN26... - Protein tyrosine phosphatase type IVA, member 2 OS=Felis catus GN=PTP4A2 PE=4 SV=1	1.0E-41	[1..167]	[1..167]
gi\|114555281, gi... - gi\|114555281\|ref\|XP_001160778.1\| PREDICTED: protein tyrosine phosphatase type IVA, member 2 isoform ...	2.0E-41	[1..167]	[1..167]
gi\|60654551 - gi\|60654551\|gb\|AAX29966.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct]	2.0E-41	[1..167]	[4..173]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRPAPVEIS YENMRFLITH NPTNATLNKF TEELKKYGVT TLVRVCDATY DKAPVEKEGI  60
   61 HVLDWPFDDG APPPNQIVDD WLNLLKTKFR EEPGCCVAVH CVAGLGRAPV LVALALIECG 120
  121 MKYEDAVQFI RQKRRGAFNS KQLLYLEKYR PKMRLRFRDT NGHCCVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1xm2A
Description:	Crystal structure of Human PRL-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits