YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116076502, gi...
Organism:	Streptococcus pneumoniae D39
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116076502, gi....

Description	E-value	Query Range	Subject Range
gi\|88183696, gi\|... - gi\|88183696\|gb\|EAQ91164.1\| hypothetical protein CHGG_03099 [Chaetomium globosum CBS 148.51], gi\|1162...	98.0	[0..3]	[105..346]
gi\|30692518, gi\|... - gi\|30692518\|gb\|AAP33390.1\| CrcB [Bacillus thuringiensis serovar aizawai], gi\|221665115\|gb\|ACM24761.1...	97.0	[0..4]	[108..177]
CRCB1_BRADU - Putative fluoride ion transporter CrcB 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13... CRB1_BRAJA, CRCB... - Protein CrcB homolog 1 OS=Bradyrhizobium japonicum GN=crcB1 PE=3 SV=1, (Q89RX4) Protein crcB homolog...	94.0	[0..1]	[106..14]
gi\|67545817, gi\|... - gi\|67545817\|ref\|ZP_00423736.1\| Camphor resistance CrcB protein [Burkholderia vietnamiensis G4], gi\|6...	94.0	[0..3]	[108..102]
gi\|166852950, gi... - gi\|167038710\|ref\|YP_001661695.1\| CrcB protein [Thermoanaerobacter sp. X514], gi\|166852950\|gb\|ABY9135... gi\|241883051, gi... - gi\|241904583\|ref\|ZP_04789268.1\| CrcB protein [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|24... gi\|242258471, gi... - gi\|242258471\|ref\|ZP_04803270.1\| CrcB protein [Thermoanaerobacter sp. X513], gi\|242230005\|gb\|EES32417... gi\|167038577, gi... - gi\|76795537\|ref\|ZP_00777910.1\| Camphor resistance CrcB protein [Thermoanaerobacter ethanolicus ATCC ...	93.0	[0..1]	[107..1]
gi\|218900224, gi... - gi\|218900224\|ref\|YP_002448635.1\| crcB protein [Bacillus cereus G9842], gi\|218540671\|gb\|ACK93065.1\| c... gi\|75760557, gi\|... - gi\|75760557\|ref\|ZP_00740591.1\| CrcB family protein [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228791497, gi... - gi\|228968194\|ref\|ZP_04129194.1\| Protein crcB 1 [Bacillus thuringiensis serovar sotto str. T04001], g... gi\|228903577, gi... - gi\|228903577\|ref\|ZP_04067698.1\| Protein crcB 1 [Bacillus thuringiensis IBL 4222], gi\|228856006\|gb\|EE...	93.0	[0..1]	[109..11]
gi\|147763681, gi... - gi\|149012355\|ref\|ZP_01833424.1\| crcB protein [Streptococcus pneumoniae SP19-BS75], gi\|147763681\|gb\|E... gi\|168575749, gi... - gi\|183578342\|gb\|EDT98870.1\| putative crcB protein [Streptococcus pneumoniae MLV-016], gi\|168575749\|r... gi\|149007039, gi... - gi\|149007039\|ref\|ZP_01830708.1\| hypothetical protein CGSSp18BS74_10035 [Streptococcus pneumoniae SP1... gi\|172042280, gi... - gi\|172042280\|gb\|EDT50326.1\| putative CrcB protein [Streptococcus pneumoniae CDC1873-00], gi\|16848449... gi\|149002668, gi... - gi\|149002668\|ref\|ZP_01827600.1\| crcB protein [Streptococcus pneumoniae SP14-BS69], gi\|147759279\|gb\|E... gi\|182684231, gi... - gi\|182684231\|ref\|YP_001835978.1\| crcB protein [Streptococcus pneumoniae CGSP14], gi\|182629565\|gb\|ACB... gi\|147755244, gi... - gi\|148998934\|ref\|ZP_01826369.1\| crcB protein [Streptococcus pneumoniae SP11-BS70], gi\|147755244\|gb\|E... gi\|168996255, gi... - gi\|169833753\|ref\|YP_001694743.1\| hypothetical protein SPH_1436 [Streptococcus pneumoniae Hungary19A-... gi\|148994105, gi... - gi\|148994105\|ref\|ZP_01823445.1\| crcB protein [Streptococcus pneumoniae SP9-BS68], gi\|147927458\|gb\|ED... gi\|221231981, gi... - gi\|221231981\|ref\|YP_002511133.1\| CrcB-like protein [Streptococcus pneumoniae ATCC 700669], gi\|220674... gi\|194357671, gi... - gi\|194398004\|ref\|YP_002037896.1\| CrcB protein [Streptococcus pneumoniae G54], gi\|194357671\|gb\|ACF561... gi\|225854758, gi... - gi\|225854758\|ref\|YP_002736270.1\| putative Protein CrcB homolog 1 [Streptococcus pneumoniae JJA], gi\|... gi\|225860875, gi... - gi\|225860875\|ref\|YP_002742384.1\| putative Protein CrcB homolog 1 [Streptococcus pneumoniae Taiwan19F... gi\|237649992 - gi\|237649992\|ref\|ZP_04524244.1\| hypothetical protein SpneC1_04566 [Streptococcus pneumoniae CCRI 197... gi\|237821102 - gi\|237821102\|ref\|ZP_04596947.1\| hypothetical protein SpneC19_02054 [Streptococcus pneumoniae CCRI 19... gi\|242245543, gi... - gi\|242245543\|ref\|ZP_04799980.1\| camphor resistance protein [Streptococcus pneumoniae TCH8431/19A], g... CRB1_STRPN, CRCB... - Protein CrcB homolog 1 OS=Streptococcus pneumoniae GN=crcB1 PE=3 SV=1, (Q97QC5) Protein crcB homolog... gi\|147931162, gi... - gi\|149019292\|ref\|ZP_01834654.1\| crcB protein [Streptococcus pneumoniae SP23-BS72], gi\|147931162\|gb\|E... CRCB1_STRPN - Putative fluoride ion transporter CrcB 1 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334...	93.0	[0..1]	[109..1]
CRCB3_STRAW, CRB... - Protein CrcB homolog 3 OS=Streptomyces avermitilis GN=crcB3 PE=3 SV=1, (Q82LR8) Protein crcB homolog... CRCB3_STRAW - Putative fluoride ion transporter CrcB 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 ...	93.0	[0..2]	[109..62]
gi\|86750065, gi\|... - gi\|86750065\|ref\|YP_486561.1\| hypothetical protein RPB_2948 [Rhodopseudomonas palustris HaA2], gi\|865...	92.0	[0..2]	[108..19]
gi\|88941515, gi\|... - gi\|88941515\|ref\|ZP_01146929.1\| crcB protein [Acidiphilium cryptum JF-5], gi\|88919772\|gb\|EAR38909.1\| ...	91.0	[0..2]	[109..72]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIVYLAIAC GFGALVRYFF SRYNQASKLP LGTLIANLLG CFLIGVFYNH VESKEVYAIL  60
   61 ATGFCGGLTT FSTLNDELQR LLSDKKVFYS YLILTYLGGL VAIFLGILL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.207608
Match:	PF02537.6
Description:	No description for PF02537.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits