YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157928759, gi...
Organism:	synthetic construct
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157928759, gi....

Description	E-value	Query Range	Subject Range
gi\|50414924, gi\|... - gi\|50414924\|gb\|AAH77832.1\| Unknown (protein for MGC:80511) [Xenopus laevis], gi\|215539482\|gb\|AAI7003...	3.0E-30	[3..126]	[42..163]
gi\|38156576, gi\|... - gi\|38156576\|gb\|AAR12910.1\| nuclear transcription factor-Y B subunit 3 [Bufo gargarizans], gi\|3815657...	5.0E-30	[3..126]	[42..163]
NFYB_CHICK - Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2	4.0E-29	[1..126]	[37..162]
gi\|87240537 - gi\|87240537\|gb\|ABD32395.1\| Histone-fold/TFIID-TAF/NF-Y [Medicago truncatula]	4.0E-29	[2..129]	[74..193]
gi\|26347857 - gi\|26347857\|dbj\|BAC37577.1\| unnamed protein product [Mus musculus]	7.0E-29	[1..131]	[39..171]
gi\|62955099, gi\|... - gi\|62955099\|ref\|NP_001017565.1\| nuclear transcription factor Y, beta [Danio rerio], gi\|62531040\|gb\|A...	7.0E-29	[3..115]	[41..151]
gi\|114646579 - gi\|114646579\|ref\|XP_509327.2\| PREDICTED: similar to Nuclear transcription factor Y, beta [Pan troglo...	3.0E-28	[1..126]	[31..156]
gi\|46111453, gi\|... - gi\|46111453\|ref\|XP_382784.1\| hypothetical protein FG02608.1 [Gibberella zeae PH-1], gi\|42544585\|gb\|E...	3.0E-28	[8..126]	[74..192]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVVVGKDK GGEQRLISLP LSRIRVIMKS SPEVSSINQE ALVLTAKATE LFVQCLATYS  60
   61 YRHGSGKEKK VLTYSDLANT AQQSETFQFL ADILPKKILA SKYLKMLKEE KREEDEENDN 120
  121 DNESDHDEAD S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	1zbbC
Description:	Structure of the 4_601_167 Tetranucleosome
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits