YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254236707, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254236707, gi....

Description	E-value	Query Range	Subject Range
ISPG_CHRSD - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Chromohalobacter salexigens (st...	0.0	[3..370]	[1..369]
gi\|88799905, gi\|... - gi\|88799905\|ref\|ZP_01115477.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Reinekea sp. ME...	0.0	[1..370]	[1..371]
gi\|94426701, gi\|... - gi\|94501125\|ref\|ZP_01307648.1\| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Oceanobacter sp...	0.0	[1..370]	[1..371]
ISPG_PSESM - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Pseudomonas syringae pv. tomato... ISPG_PSESM - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas syringae pv. tomato GN=ispG PE=3... gi\|213971518, gi... - gi\|213971518\|ref\|ZP_03399629.1\| 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Pseudomonas...	0.0	[3..371]	[1..369]
ISPG_AZOVD - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Azotobacter vinelandii (strain ... gi\|53612553, gi\|... - gi\|67156528\|ref\|ZP_00418121.1\| IspG protein [Azotobacter vinelandii AvOP], ref\|ZP_00342610.1\| COG082...	0.0	[3..355]	[1..354]
ISPG_PSEPF - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Pseudomonas fluorescens (strain...	0.0	[3..371]	[1..369]
ISPG_PSEF5 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Pseudomonas fluorescens (strain...	0.0	[3..371]	[1..369]
ISPG_PSEPK - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Pseudomonas putida (strain KT24... tr\|E4R533\|E4R533... - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain BIRD-1) GN=ispG P...	0.0	[3..371]	[1..369]
tr\|I7CA16\|I7CA16... - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas putida (strain DOT-T1E) GN=ispG ... ISPG_PSEP1 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Pseudomonas putida (strain F1 /...	0.0	[3..354]	[1..352]
ISPG_HAHCH - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) OS=Hahella chejuensis (strain KCTC...	0.0	[3..371]	[1..370]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIHSASPII RRKSRKIWVG NVPVGGDAPI AVQSMTNTET CDVAATVAQI RRLEDAGADI  60
   61 VRVSVPDMDA AEAFGKIKQQ VNVPLVADIH FDYRIALRVA ELGVDCLRIN PGNIGREDRV 120
  121 KAVVDAARER NIPIRIGVNA GSL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1vs1A
Description:	No description for 1vs1A was found.

Predicted Domain #2

Region A:
Residues: [144-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKDLQKKYGE PTPEALLESA MRHVDHLDKL DFQNFKVSVK ASDVFMAVAA YRLLARQIEQ  60
   61 PLHLGITEAG GLRSGTVKSA VGLGMLLAEG IGDTIRISLA ADPVEEIKVG FDILKSLHLR 120
  121 SRGINFIACP SCSRQNFDVV KTMNELEGRL EDLLVPMDVA VIGCVVNGPG EAKEAHVGLT 180
  181 GGTPNLVYID GKPSQKLTND NLVDELERLI RQKAAEKAEA DASLIARG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1aopA
Description:	SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.39967796334655	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.35984992810247	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.24866402271306	bayes_pls_golite062009
oxidoreductase activity	1.08956206944325	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: