YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123995645, gi...
Organism:	synthetic construct
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123995645, gi....

Description	E-value	Query Range	Subject Range
CD9_BOVIN - CD9 antigen OS=Bos taurus GN=CD9 PE=2 SV=2	8.0E-56	[1..228]	[1..226]
CD9_MOUSE - CD9 antigen OS=Mus musculus GN=Cd9 PE=1 SV=2	1.0E-55	[1..228]	[1..226]
gi\|21914408 - gi\|21914408\|gb\|AAM81376.1\|AF525029_1 transmembrane protein CD9 [Sus scrofa]	4.0E-55	[1..228]	[1..226]
CD9_RAT - CD9 antigen OS=Rattus norvegicus GN=Cd9 PE=1 SV=2	2.0E-54	[1..228]	[1..226]
gi\|109095183, gi... - gi\|109095183\|ref\|XP_001102751.1\| PREDICTED: CD9 molecule isoform 2 [Macaca mulatta], gi\|109095181\|re...	9.0E-54	[1..228]	[1..228]
CD9_CHLAE - CD9 antigen OS=Chlorocebus aethiops GN=CD9 PE=2 SV=2	2.0E-53	[1..228]	[1..228]
gi\|54696558, gi\|... - gi\|61366160\|gb\|AAX42822.1\| CD9 antigen [synthetic construct], gi\|54696558\|gb\|AAV38651.1\| CD9 antigen...	3.0E-53	[1..228]	[1..228]
gi\|114643018, gi... - gi\|114643022\|ref\|XP_508947.2\| PREDICTED: CD9 antigen isoform 5 [Pan troglodytes], gi\|114643020\|ref\|X...	4.0E-53	[1..228]	[1..228]
gi\|15080490 - gi\|15080490\|gb\|AAH11988.1\| CD9 molecule [Homo sapiens]	6.0E-53	[1..228]	[1..228]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGTKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQETN NNNSSFYTGV  60
   61 YILIGAGALM MLVGFLGCCG AVQESQCMLG LFFGFLLVIF AI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1oedC
Description:	Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [103-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIAAAIWGYS HKDEVIKEVQ EFYKDTYNKL KTKDEPQRET LKAIHYALNC CGLAGGVEQF  60
   61 ISDICPKKDV LETFTVKSCP DAIKEVFDNK FHIIGAVGIG IAVVMIFGMI FSMILCCAIR 120
  121 RNREMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1g8qA
Description:	CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.62531598262239	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: