YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114663139
Organism:	Pan troglodytes
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114663139.

Description	E-value	Query Range	Subject Range
AGRP_PIG - Agouti-related protein OS=Sus scrofa GN=AGRP PE=3 SV=2	3.0E-53	[1..132]	[1..134]
AGRP_BOVIN - Agouti-related protein OS=Bos taurus GN=AGRP PE=2 SV=1	6.0E-52	[1..132]	[1..134]
AGRP_MOUSE - Agouti-related protein OS=Mus musculus GN=Agrp PE=1 SV=1	1.0E-48	[1..132]	[1..131]
gi\|73957497 - gi\|73957497\|ref\|XP_853932.1\| PREDICTED: similar to Agouti-related protein precursor [Canis familiari...	2.0E-47	[16..132]	[16..132]
gi\|109128902 - gi\|109128902\|ref\|XP_001091740.1\| PREDICTED: similar to Agouti-related protein precursor [Macaca mula...	1.0E-46	[18..132]	[18..132]
gi\|62665164, gi\|... - gi\|62665164\|ref\|XP_574228.1\| PREDICTED: similar to Agouti-related protein precursor [Rattus norvegic...	2.0E-44	[1..131]	[1..128]
gi\|2351715 - gi\|2351715\|gb\|AAB68621.1\| agouti-related protein [Homo sapiens]	6.0E-42	[18..132]	[18..132]
gi\|48256953 - gi\|48256953\|gb\|AAT41659.1\| agouti-related peptide [Ovis aries]	1.0E-39	[24..126]	[1..105]
gi\|36788207 - gi\|36788207\|emb\|CAD88211.1\| agouti-related protein precursor [Carassius auratus]	1.0E-37	[1..122]	[4..119]

Back

Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAAVLSCA LLLALPATRG AQMGLAPMEG IRRPDQALLP ELPGLGLRAP LKKTTAEQAE  60
   61 EDLLQEAQAL AEVLDLQDRE PRSSRRCVRL HESCLGQQVP CCDPCATCYC RFFNAFCYCR 120
  121 KLGTAMNPCS RT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.229148
Match:	PF05039.3
Description:	No description for PF05039.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits